PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR10G00860.2

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

G2-like

Protein Properties

Length: 1469aa MW: 167224 Da PI: 8.8792

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR10G00860.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	44.9	2.5e-14	502	553	3	55
G2-like 3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 r +Wtp HerF++++ + G kA P+++++lm+v+gL++e ++ HL kY l LPERR10G00860.2 502 RFVWTPAFHERFINVILRQ-GLYKADPQKVMDLMDVEGLSREIIAIHLKKYHL 553 899*************9.9****************************76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.50.2300	4.2E-13	142	218	No hit	No description
SuperFamily	SSF52172	3.98E-14	143	249	IPR011006	CheY-like superfamily
PROSITE profile	PS50110	13.69	145	311	IPR001789	Signal transduction response regulator, receiver domain
CDD	cd00156	3.97E-8	147	233	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.6E-14	498	557	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.13E-7	500	557	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-9	502	553	IPR006447	Myb domain, plants
SuperFamily	SSF52540	1.75E-49	621	907	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Gene3D	G3DSA:3.40.50.300	1.3E-4	657	759	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Pfam	PF00931	1.0E-37	664	933	IPR002182	NB-ARC
PRINTS	PR00364	2.1E-10	668	683	No hit	No description
PRINTS	PR00364	2.1E-10	743	757	No hit	No description
PRINTS	PR00364	2.1E-10	844	858	No hit	No description
SuperFamily	SSF52058	2.3E-39	967	1167	IPR032675	Leucine-rich repeat domain, L domain-like
Gene3D	G3DSA:3.80.10.10	2.4E-17	1001	1148	IPR032675	Leucine-rich repeat domain, L domain-like
PRINTS	PR00364	2.1E-10	1069	1085	No hit	No description
Gene3D	G3DSA:3.80.10.10	1.9E-17	1260	1455	IPR032675	Leucine-rich repeat domain, L domain-like
SuperFamily	SSF52058	2.3E-39	1270	1453	IPR032675	Leucine-rich repeat domain, L domain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding
GO:0043531	Molecular Function	ADP binding

Sequence ? help Back to Top
Protein Sequence Length: 1469 aa Download sequence Send to blast
MKKEKHADIK VKEEKEERKP NEVLKHAPPM LPYQSGKLLP QKRSRSETIS GSNPHLYAPQ 60 HSPTDACKKQ KSEVYYLPLL SPSALSEPSC FSMDRGLFPF PVMGSKGAEG RDDEQGLGSS 120 QEFGDLPFLD RKMNTMPEGF LMRMRVLVVD NDESNLTSLS QMLIGFLCHV TTCLRGAEAL 180 AMLVDRRDNF DLVLSEAHMP DMNMFILTEH VGLKMYVPVA VKPIAEEELK TLIFHVSRIK 240 LCNNYNELVQ STSLYHFGQR RQVSNPRMGK AQQKEEISGY TISISSVILA VLFLTKLRRF 300 ETRFTRVKEE TSGSKSNSYI EFVQSTSTYQ SGQSRQLSNP HKCKTEWKVP SRIKSPNMKK 360 FSSAILAIIF ILRLTFLTRL DRLKEVSSRQ CKAFSTAFLA ILFLAKLRRL KISKSETRFK 420 RVIIFGSTSR NDNRLVRPMP TSIYFSGQSR QVGIPHLVKA RWRILFCVAI FVAQLRGLKM 480 SRSKTRLTRV KEEEISGSKT LRFVWTPAFH ERFINVILRQ GLYKADPQKV MDLMDVEGLS 540 REIIAIHLKK YHLSLKRLAH IYHLSLKRLA HIPLSKAVSD IHGDTRPAGF WIQDINKAKL 600 LQEVRDSVYY VNEHQFVTES IRLQSNMVPE EYMTFSYQKE FNKLMELLGV SPRIAINRNK 660 AGPENVSVLP LVGHGGVGKT TLALQIFNDK NVLDYFDRRC WISASEVFHE QDLIKKFIRA 720 VAECEMESDD LGCIQRVLTG GIVDQSKRFL FVVDNIQECA CDGISAGWMG SLSILQHAKF 780 GSMVLMTTRS MKVANTFGTM NAFLLGGFPE VTLWKFLKIC AFGSDTFISN HFLEDIGRRI 840 VEKLNGIPFA AKILGRLLSL HLSSEFWSNI LRSELWEWPE EETGVSPYLL LSYQYLPSHL 900 KQCFSFCSTY PKGYKFDKDI LVDCWEAVGL VVAHKKIPIQ DVGGSYFDQL VNRSFFQKIP 960 SSSKYVMNDM LHDMALVVAK NECIMIRDKT DLLMVHPNIL HLSVHSKSCL DLGSLESLSR 1020 YNKLRSLVCN GVDSSIITRA AEVWFHKLRE VRMLSFDCCQ LKELPESIGN LKYLRYLNIS 1080 SCTFDKLPSS FWCLSKLEIL YAHGCTFQHL PKDITKLTNL RRVKLNDSLT NQFRYMPEVG 1140 KLQFLQELPY FDVGNEHGRY IGELKNMNHV VGSLEISGLV NVMSKDEAAE AQLHQKNYLD 1200 TLILSWDESV TTYTKQLITG LALEIIEGLC PSYYLKHLGI KCYKGFELHP SWFNKEKLHC 1260 LSSISIYSCP NLVSLPFQST ASSCNRSITR FPWLTKLSIS RCRKLTSLAK FLESDCFPAM 1320 KSIHIEKCES LVSLPAQGFA GFAHLEEVEF SECWNLNWPP DLVFPSSLKE LKLEACGDIS 1380 ESTFSCLHSL CALTTLKLQF CHLVKSIPAQ AWSSLVSLEN LTIFYCKGLQ SVGGSEAIAK 1440 VENVDISDCP CLQDLVQPFR KGSNAQQYL

Sequence ? help Back to Top

Protein Sequence Length: 1469 aa Download sequence Send to blast

MKKEKHADIK VKEEKEERKP NEVLKHAPPM LPYQSGKLLP QKRSRSETIS GSNPHLYAPQ  60
HSPTDACKKQ KSEVYYLPLL SPSALSEPSC FSMDRGLFPF PVMGSKGAEG RDDEQGLGSS  120
QEFGDLPFLD RKMNTMPEGF LMRMRVLVVD NDESNLTSLS QMLIGFLCHV TTCLRGAEAL  180
AMLVDRRDNF DLVLSEAHMP DMNMFILTEH VGLKMYVPVA VKPIAEEELK TLIFHVSRIK  240
LCNNYNELVQ STSLYHFGQR RQVSNPRMGK AQQKEEISGY TISISSVILA VLFLTKLRRF  300
ETRFTRVKEE TSGSKSNSYI EFVQSTSTYQ SGQSRQLSNP HKCKTEWKVP SRIKSPNMKK  360
FSSAILAIIF ILRLTFLTRL DRLKEVSSRQ CKAFSTAFLA ILFLAKLRRL KISKSETRFK  420
RVIIFGSTSR NDNRLVRPMP TSIYFSGQSR QVGIPHLVKA RWRILFCVAI FVAQLRGLKM  480
SRSKTRLTRV KEEEISGSKT LRFVWTPAFH ERFINVILRQ GLYKADPQKV MDLMDVEGLS  540
REIIAIHLKK YHLSLKRLAH IYHLSLKRLA HIPLSKAVSD IHGDTRPAGF WIQDINKAKL  600
LQEVRDSVYY VNEHQFVTES IRLQSNMVPE EYMTFSYQKE FNKLMELLGV SPRIAINRNK  660
AGPENVSVLP LVGHGGVGKT TLALQIFNDK NVLDYFDRRC WISASEVFHE QDLIKKFIRA  720
VAECEMESDD LGCIQRVLTG GIVDQSKRFL FVVDNIQECA CDGISAGWMG SLSILQHAKF  780
GSMVLMTTRS MKVANTFGTM NAFLLGGFPE VTLWKFLKIC AFGSDTFISN HFLEDIGRRI  840
VEKLNGIPFA AKILGRLLSL HLSSEFWSNI LRSELWEWPE EETGVSPYLL LSYQYLPSHL  900
KQCFSFCSTY PKGYKFDKDI LVDCWEAVGL VVAHKKIPIQ DVGGSYFDQL VNRSFFQKIP  960
SSSKYVMNDM LHDMALVVAK NECIMIRDKT DLLMVHPNIL HLSVHSKSCL DLGSLESLSR  1020
YNKLRSLVCN GVDSSIITRA AEVWFHKLRE VRMLSFDCCQ LKELPESIGN LKYLRYLNIS  1080
SCTFDKLPSS FWCLSKLEIL YAHGCTFQHL PKDITKLTNL RRVKLNDSLT NQFRYMPEVG  1140
KLQFLQELPY FDVGNEHGRY IGELKNMNHV VGSLEISGLV NVMSKDEAAE AQLHQKNYLD  1200
TLILSWDESV TTYTKQLITG LALEIIEGLC PSYYLKHLGI KCYKGFELHP SWFNKEKLHC  1260
LSSISIYSCP NLVSLPFQST ASSCNRSITR FPWLTKLSIS RCRKLTSLAK FLESDCFPAM  1320
KSIHIEKCES LVSLPAQGFA GFAHLEEVEF SECWNLNWPP DLVFPSSLKE LKLEACGDIS  1380
ESTFSCLHSL CALTTLKLQF CHLVKSIPAQ AWSSLVSLEN LTIFYCKGLQ SVGGSEAIAK  1440
VENVDISDCP CLQDLVQPFR KGSNAQQYL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j5t_C	3e-35	577	1277	82	783	Disease resistance RPP13-like protein 4
6j5t_F	3e-35	577	1277	82	783	Disease resistance RPP13-like protein 4
6j5t_G	3e-35	577	1277	82	783	Disease resistance RPP13-like protein 4
6j5t_L	3e-35	577	1277	82	783	Disease resistance RPP13-like protein 4
6j5t_O	3e-35	577	1277	82	783	Disease resistance RPP13-like protein 4
6j5u_A	3e-35	577	1277	82	783	Disease resistance RPP13-like protein 4
6j5v_A	3e-35	577	1277	82	783	Disease resistance RPP13-like protein 4
6j5w_A	3e-35	577	1277	82	783	Disease resistance RPP13-like protein 4
6j6i_C	3e-35	577	1277	82	783	Disease resistance RPP13-like protein 4
6j6i_F	3e-35	577	1277	82	783	Disease resistance RPP13-like protein 4
6j6i_G	3e-35	577	1277	82	783	Disease resistance RPP13-like protein 4
6j6i_L	3e-35	577	1277	82	783	Disease resistance RPP13-like protein 4
6j6i_O	3e-35	577	1277	82	783	Disease resistance RPP13-like protein 4
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR10G00860.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0D9XHG8	0.0	A0A0D9XHG8_9ORYZ; Uncharacterized protein
STRING	LPERR10G00860.1	0.0	(Leersia perrieri)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16110.1	2e-16	response regulator 2