PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR10G00500.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family BBR-BPC
Protein Properties Length: 341aa    MW: 37317.5 Da    PI: 10.3115
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR10G00500.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind374.91.4e-11413371300
        GAGA_bind   1 mdddgsre.rnkg.yyepaaslkenlglqlmssia.erdaki.........rernlalsekkaavaerd........................m 58 
                      mdddg+   r +g +yep +   +nlglqlmss++ +rd+k+         + + +  + +++ +++r+                        m
  LPERR10G00500.1   1 MDDDGNITlRGWGgFYEPPPPPPRNLGLQLMSSVPaDRDTKQllsaspfmhH-HAH-QHVPHHQHHAREcggaggnggapnggmppteapsmnM 92 
                      9****9999****9***9988888**********99******9988888632.333.4666777788889************************ PP

        GAGA_bind  59 aflqrdkalaernkalverdnkllalllvensla.....salpvgvqvlsgtksidslqqlse..pqledsavelreeeklealpieeaaeeak 145
                      +f+++d++++    +++ r+ k+l+ l v ++       +++pvg+++++gt+s ++lq++++  +q ++++ + ++ee+++++ iee++++++
  LPERR10G00500.1  93 NFVRNDMWMHP---QHHSRETKVLHTLNVGHGGHiahsaHHDPVGYGMIPGTHSGHTLQMMQQpeSQPQPQPPPPPKEECISSPLIEENVPVIS 183
                      ***********...7899*********9999887888999********************8884455566666699****************** PP

        GAGA_bind 146 ekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCttti 239
                      e + +kkrq++++pk+++ kk+kk +++++++ +++   +r++ ++k+i++v+ng++lD s++P+PvCsCtG+++qCY+WG+GGWqSaCCttti
  LPERR10G00500.1 184 EPPPPKKRQQGRQPKVPRPKKPKK-PAAPREDGAPNPPATRRRGPRKNIGMVINGIDLDLSRIPTPVCSCTGSPQQCYRWGAGGWQSACCTTTI 276
                      ************************.788888888777679****************************************************** PP

        GAGA_bind 240 SvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvti 300
                      S+yPLP+stkrrgaRiagrKmS+gafkk+LekLa+eGy+l+np+DLk++WAkHGtnkfvti
  LPERR10G00500.1 277 STYPLPMSTKRRGARIAGRKMSHGAFKKVLEKLAGEGYNLNNPIDLKTFWAKHGTNKFVTI 337
                      ************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012264.6E-1831338IPR010409GAGA-binding transcriptional activator
PfamPF062176.3E-1201337IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MDDDGNITLR GWGGFYEPPP PPPRNLGLQL MSSVPADRDT KQLLSASPFM HHHAHQHVPH  60
HQHHARECGG AGGNGGAPNG GMPPTEAPSM NMNFVRNDMW MHPQHHSRET KVLHTLNVGH  120
GGHIAHSAHH DPVGYGMIPG THSGHTLQMM QQPESQPQPQ PPPPPKEECI SSPLIEENVP  180
VISEPPPPKK RQQGRQPKVP RPKKPKKPAA PREDGAPNPP ATRRRGPRKN IGMVINGIDL  240
DLSRIPTPVC SCTGSPQQCY RWGAGGWQSA CCTTTISTYP LPMSTKRRGA RIAGRKMSHG  300
AFKKVLEKLA GEGYNLNNPI DLKTFWAKHG TNKFVTISIT K
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00253DAPTransfer from AT2G01930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR10G00500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612725.11e-156barley B recombinant-like protein A isoform X1
RefseqXP_015612727.11e-156barley B recombinant-like protein A isoform X1
RefseqXP_015612730.11e-156barley B recombinant-like protein B isoform X1
RefseqXP_015612731.11e-156barley B recombinant-like protein B isoform X1
SwissprotP0DH881e-157BBRA_ORYSJ; Barley B recombinant-like protein A
SwissprotP0DH891e-157BBRB_ORYSJ; Barley B recombinant-like protein B
TrEMBLA0A0D9XHB80.0A0A0D9XHB8_9ORYZ; Uncharacterized protein
STRINGLPERR10G00500.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22113697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.32e-60basic pentacysteine 2
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]