PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR09G16130.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family BES1
Protein Properties Length: 628aa    MW: 70592.8 Da    PI: 5.4977
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR09G16130.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822120.72e-3733115384
           DUF822   3 sgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaags 84 
                      ++r + ++E+E++k+RER+RRa++ +i+aGLR++Gny+l++raD+neV++AL+reAGwvv +DGtt++ +s+   + ++a+g+
  LPERR09G16130.1  33 GRRGRAQEEKERTKLRERQRRAMTGRILAGLRRHGNYNLRVRADINEVIAALAREAGWVVLPDGTTFPSSSSNSsHPHQAVGR 115
                      6788999*************************************************************998888444455444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056876.8E-3434116IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514459.89E-188185624IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.801.8E-205188622IPR013781Glycoside hydrolase, catalytic domain
PfamPF013732.8E-114194612IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.2E-77225239IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.2E-77246264IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.2E-77268289IPR001554Glycoside hydrolase, family 14
PROSITE patternPS005060272280IPR018238Glycoside hydrolase, family 14, conserved site
PRINTSPR008423.4E-9351360IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007502.2E-77361383IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.2E-77434453IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.2E-77468484IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.2E-77485496IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.2E-77503526IPR001554Glycoside hydrolase, family 14
PRINTSPR008423.4E-9506516IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007502.2E-77543565IPR001554Glycoside hydrolase, family 14
PRINTSPR008423.4E-9594608IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR008423.4E-9609623IPR001371Glycoside hydrolase, family 14B, plant
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 628 aa     Download sequence    Send to blast
MEVDGVKEEE EEEEEDDYYL EEADQHQQQM VVGRRGRAQE EKERTKLRER QRRAMTGRIL  60
AGLRRHGNYN LRVRADINEV IAALAREAGW VVLPDGTTFP SSSSNSSHPH QAVGRPSIAI  120
PAPAPAPLPL PLRGVSPVAA RPISSSTAGL LLDPPHAVPV PVPDPLLSLP PMDPQVPDLL  180
PERDFAGTPY VPVYVMLPLG VVNANGEVVD ADVLVGQLRV LKASGVDGVM VDCWWGNVEA  240
HRPQEYNWTG YKRLFHMIRE LKLKLQVVMS FHECGGNVGD DVSIPLPHWV TEIGRSNPDI  300
YFTDRAGRRN TECLSWGIDK ERVLQGRTGV EVYFDYMRSF RVEFDEYFED GIISEIEIGL  360
GACGELRYPS YPAKHGWKYP GIGEFQCYDR YLQKSLRRAA EARGHTIWAR APDNAGHYNS  420
EPNLTGFFCD GGDYDSYYGR FFLNWYSQVL VDHADRALML ARLAFEASHI AVKVSGVHWW  480
YKTASHAAEL TAGFYNPCNR DGYAPIAAVL KKHGAALNFT CVELRTMDQH EVFPEAFADP  540
EGLVWQVLNA AWDAGIAVAS ENALPCYDRD GFNKILENAK PLNDPDGRHL LGFTYLRLSK  600
VLFERANFLE FERFVKRMHG EAVLDLQV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1bfn_A1e-15919062111444BETA-AMYLASE
1bya_A1e-15919062111444BETA-AMYLASE
1byb_A1e-15919062111444BETA-AMYLASE
1byc_A1e-15919062111444BETA-AMYLASE
1byd_A1e-15919062111444BETA-AMYLASE
1q6c_A1e-15919062111444beta-amylase
1wdp_A1e-15919062111444Beta-amylase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR09G16130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0703000.0AK070300.1 Oryza sativa Japonica Group cDNA clone:J023048N01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611670.20.0beta-amylase 2, chloroplastic
SwissprotO808310.0BAM7_ARATH; Beta-amylase 7
TrEMBLA0A0D9XH020.0A0A0D9XH02_9ORYZ; Beta-amylase
STRINGLPERR09G16130.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21413663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.10.0beta-amylase 7
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]