PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR09G14740.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 365aa    MW: 40281.3 Da    PI: 4.6252
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR09G14740.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.33.5e-541152461128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lppGfrFhPtdeelv++yLk+k++g k+el ++i+evd+yk+ePw+L  k  + +++ ewyfF +rd+ky++g r+nrat++gyWk+tgkd++v
  LPERR09G14740.1 115 LPPGFRFHPTDEELVNYYLKRKIHGLKIEL-DIIPEVDLYKCEPWELAeKsFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRRV 207
                      79****************************.99**************84335556888************************************ PP

              NAM  93 lsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +s+   +g+++g+kktLv+y+grap+g++tdWvmheyrl
  LPERR09G14740.1 208 VSQqqhGGRAIGMKKTLVYYRGRAPQGVRTDWVMHEYRL 246
                      **87777778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-64109269IPR003441NAC domain
PROSITE profilePS5100560.773115269IPR003441NAC domain
PfamPF023651.6E-29116246IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MEKVQASCEG EGIYKREAKG VHPIDQNLVG GMTMSTGVPT VTVPPTPAVA DANNLLIRVL  60
AAAVWKGRGN AEEEAKFLWA QPPAPVVEEE EAAGQLQTPP PPPLLLSSLM APVGLPPGFR  120
FHPTDEELVN YYLKRKIHGL KIELDIIPEV DLYKCEPWEL AEKSFLPSRD PEWYFFGPRD  180
RKYPNGFRTN RATRAGYWKS TGKDRRVVSQ QQHGGRAIGM KKTLVYYRGR APQGVRTDWV  240
MHEYRLDDKD CEDTIPIQDT YALCRVFKKN AICNEVEELQ GQCSMALLEG ACQQLLATSG  300
GSQVEQYETP SPPEVAVGST SGGADAEEDP EKDESWMQFI SDDAWYASNA GDGGEESTSC  360
VAIAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-5111127811174Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00363DAPTransfer from AT3G17730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR09G14740.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269|PubMed:25081480}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612702.20.0NAC domain-containing protein 86
SwissprotA4VCM01e-83NAC45_ARATH; NAC domain-containing protein 45
TrEMBLA0A0D9XGG60.0A0A0D9XGG6_9ORYZ; Uncharacterized protein
STRINGLPERR09G14740.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37133879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.11e-122NAC domain containing protein 57
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]