PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR09G14430.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family Nin-like
Protein Properties Length: 1001aa    MW: 110804 Da    PI: 7.1011
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR09G14430.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK91.28.1e-29525575252
           RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                      ek++sl++l++yF++++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rkik++
  LPERR09G14430.2 525 EKTVSLQVLRQYFAGSLKDAAKSLGVCPTTLKRICRQHGINRWPSRKIKKV 575
                      799**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.587514595IPR003035RWP-RK domain
PfamPF020421.2E-25527575IPR003035RWP-RK domain
Gene3DG3DSA:3.10.20.2404.1E-24743824No hitNo description
PROSITE profilePS5174519.389743826IPR000270PB1 domain
SMARTSM006663.0E-18743826IPR000270PB1 domain
SuperFamilySSF542779.81E-21744824No hitNo description
CDDcd064075.99E-42744824No hitNo description
PfamPF005644.0E-15744824IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1001 aa     Download sequence    Send to blast
MEGGDPQPSI SLARTPSEGA SAVDLDLLEQ LLSADNAWLE VAANSSRSPN FFASPSNILT  60
DAVTTTTPAN TWWIQSGSTS TSVRERFDQA LGLIRETQSE ADVLVQLWVP VKGDDGKLVL  120
TTSGQPFTLD QRSDSLIQFR EVSTKYQFSA DVASGSSPGL PGRVFIGRLP EWSPDVRYFT  180
SYEYPRVSHA QYLDVHGTMG LPVFEKGNYS CLGVIELIMT KQKLNFTSEL NTICCALQAV  240
NLTSTEVSNI PRKKLNSASY KDALPEILEV LRAACITHKL PLAQTWVTCA QQGKRGSRHS  300
DENYRYCIST IDAACYVNES QMQSFHEACS EHHLLRGQGV AGKAFTTNQP CFLPDIGSST  360
KLEYPLSHHA KIFNLKGAVA IRLRCTRTGI ADFVLEFFLP TDCEVLEEQK AVLDSLSATM  420
RSVCQTLRVV TDKEMEDEAM RETNELNSFS PHGKNKVEEL SFGDNTTEHR EESSWTSLVG  480
PSQKGSDLAE LHAHGMLSHG GQGSTQAGDQ TSKEGSKVKR RTKMEKTVSL QVLRQYFAGS  540
LKDAAKSLGV CPTTLKRICR QHGINRWPSR KIKKVDHSLR KLQQIIDSVH GAETAFQLNT  600
LYKDLTNTSV SSDNNLSGSI TVPPANQSNL TDFEKHQYHR VSRTIPSTSL SHSSCSQSSG  660
SSPSCSGGAT KHPPQDGADL VKSGCLPQHS PVQTLQTEAA SINEHFSGQE APIDLLQDVS  720
EKAIGGQHMS QSPSSPKQTA HVGMRVKVTF GSEKVRFRLK PDCDFQELKQ EISKRLSIVD  780
MNSLIVKYLD DDSEWVLMTC DADLHECFHV YKLADIQTIK ISVHLGANPT TRVAIGHTDL  840
LTIFIARDLR IDVANILESR LQYQMLIQGL WKWPGRCIQH NSAIGLRTRK DVKIVYPDPP  900
VQNSKQKLIM VLESRSDAKG AHNTPSGVQS SHQNFFHLIE EKIRDFEDIL KIQNMETELV  960
TVRCELKQSR EAVNGSKKAA LDSALNQLEA YHKLEPLKPI I
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00154DAPTransfer from AT1G20640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR09G14430.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612115.10.0protein NLP1-like isoform X1
RefseqXP_015612116.10.0protein NLP1-like isoform X2
RefseqXP_015612117.10.0protein NLP1-like isoform X2
RefseqXP_025875998.10.0protein NLP1-like isoform X2
TrEMBLA0A0D9XGC60.0A0A0D9XGC6_9ORYZ; Uncharacterized protein
STRINGLPERR09G14430.10.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76350.10.0Nin-like family protein