PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR09G13150.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | DBB | ||||||||
Protein Properties | Length: 230aa MW: 25335.5 Da PI: 6.1584 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 25.6 | 2.5e-08 | 3 | 33 | 4 | 34 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeH 34 ++C+ +e+ ++ lfC ++ lC++C ++ H LPERR09G13150.1 3 TICDVCESAPAVLFCAADEAALCRSCDEKVH 33 68**************************998 PP | |||||||
2 | zf-B_box | 27.7 | 5.7e-09 | 52 | 91 | 2 | 37 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 + ++C+ +e+ ++ ++Ce +++ lC +C ++ H g H LPERR09G13150.1 52 KVQRCDICENAPAFFYCEIDGTSLCLSCDMTVHVGgkrtH 91 6799*****************************6655556 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 8.7E-9 | 1 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.324 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.29E-7 | 3 | 45 | No hit | No description |
Pfam | PF00643 | 1.2E-6 | 3 | 41 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 4.0E-11 | 51 | 96 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.527 | 51 | 96 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 5.3E-7 | 52 | 91 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.66E-6 | 55 | 84 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010100 | Biological Process | negative regulation of photomorphogenesis | ||||
GO:0070370 | Biological Process | cellular heat acclimation | ||||
GO:0071483 | Biological Process | cellular response to blue light | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MRTICDVCES APAVLFCAAD EAALCRSCDE KVHMCNKLAS RHVRVGLADP NKVQRCDICE 60 NAPAFFYCEI DGTSLCLSCD MTVHVGGKRT HGRYLLLRQR VEFPGDKPGH MDDVAMQQKD 120 PENRRDQKTA PHSVTKEQMT NHHNNVADDP ASDGNCDDQG NIDSKMIDLN MRPVRTHGQG 180 SNSQTQGVDL TVNNHDSPGV VPTSLRERGL ALASQWLGQN MCYCGDLFCG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR09G13150.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK122172 | 0.0 | AK122172.1 Oryza sativa Japonica Group cDNA clone:J033148H23, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015651327.1 | 1e-143 | B-box zinc finger protein 18 | ||||
Swissprot | C0SVM5 | 1e-72 | BBX19_ARATH; B-box zinc finger protein 19 | ||||
TrEMBL | A0A0D9XFW5 | 1e-171 | A0A0D9XFW5_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR09G13150.1 | 1e-172 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10334 | 22 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38960.1 | 4e-75 | DBB family protein |