PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR09G13080.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 868aa MW: 91371 Da PI: 6.2381 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 67.2 | 2.1e-21 | 130 | 185 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe++F+++++p++++r eL+++l+L+ rqVk+WFqNrR+++k LPERR09G13080.1 130 KKRYHRHTPQQIQELEAVFKECPHPDEKQRMELSRRLNLESRQVKFWFQNRRTQMK 185 688999***********************************************999 PP | |||||||
2 | START | 170.8 | 9e-54 | 344 | 578 | 1 | 205 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS...........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S... CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv..........dsgealrasgvvdmvlallveellddkeqWdetla... 77 ela++a++elvk a+ +ep+W s + +n+de+ + f++ + + +ea r+sg+ + +++lv +l+d + +W+e+++ LPERR09G13080.1 344 ELALAAMDELVKVAQMDEPLWLPSLdggfDTLNYDEYHRAFVRVLGqtslaagaagFVSEATRESGIAIISSVDLVDSLMDAP-RWSEMFPciv 436 5899*************************************8865599***********************************.********** PP .EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.......-TTSEE-EESSEEEEEEEE CS START 78 .kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe......sssvvRaellpSgiliepk 157 +a+t++ issg g +qlm aelq+lsplvp R++vf+R+++q+ +g w++vdvSv+ p s+++ ++llp+g++++++ LPERR09G13080.1 437 aRASTTDIISSGmggtrsGSIQLMHAELQVLSPLVPiREVVFLRFCKQHAEGLWAVVDVSVNAMLRPGGgdqnggGSPYMGCRLLPTGCIVQDM 530 **************************************************************987765455556799***************** PP CTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 158 snghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205 ng+skvtwv h+++++ +h l+r+l++sg+a ga++w+a lqrqc+ LPERR09G13080.1 531 NNGYSKVTWVVHAEYDETAVHHLYRPLLRSGQALGARRWLASLQRQCQ 578 ***********************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.72E-22 | 113 | 187 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.6E-23 | 118 | 187 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.301 | 127 | 187 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.5E-19 | 128 | 191 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 6.4E-19 | 130 | 185 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.04E-19 | 130 | 187 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 162 | 185 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 39.869 | 335 | 582 | IPR002913 | START domain |
SuperFamily | SSF55961 | 5.91E-28 | 339 | 578 | No hit | No description |
SMART | SM00234 | 4.5E-36 | 344 | 579 | IPR002913 | START domain |
Pfam | PF01852 | 1.8E-45 | 344 | 578 | IPR002913 | START domain |
CDD | cd08875 | 1.77E-107 | 350 | 578 | No hit | No description |
SuperFamily | SSF55961 | 2.61E-14 | 598 | 791 | No hit | No description |
SuperFamily | SSF55961 | 2.61E-14 | 819 | 850 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 868 aa Download sequence Send to blast |
MSFGGMFDGA GSGVFSYDAG GGGGGAGGGM HNTGRLLHTP PLPKPGGGYA APGLSLGLQT 60 NMDGGGGGQL GDMNRSLAMM GNGGSGSGGD GDSLGRGRED ENDSRSGSDN LEGASGDDLD 120 PDNSNPRKKK KRYHRHTPQQ IQELEAVFKE CPHPDEKQRM ELSRRLNLES RQVKFWFQNR 180 RTQMKTQIER HENALLRQEN DKLRAENMTI RDAMRNPMCS SCGGAAVLGE VSLEEQHLRI 240 ENARLKDELD RVCALAGKFL GRPVSAISSS PSPPSLHAAC SGLELGVGCT NGGGGIAGGG 300 FGALQSIPAL MGAAAMRLPA GIGGGLDGSG AGDVGGVDRA VLLELALAAM DELVKVAQMD 360 EPLWLPSLDG GFDTLNYDEY HRAFVRVLGQ TSLAAGAAGF VSEATRESGI AIISSVDLVD 420 SLMDAPRWSE MFPCIVARAS TTDIISSGMG GTRSGSIQLM HAELQVLSPL VPIREVVFLR 480 FCKQHAEGLW AVVDVSVNAM LRPGGGDQNG GGSPYMGCRL LPTGCIVQDM NNGYSKVTWV 540 VHAEYDETAV HHLYRPLLRS GQALGARRWL ASLQRQCQYL AILCSNSLPS RDHAAITPVG 600 RRSMLKLAQR MTDNFCAGVC ASAAQKWRRL DEWRGGENGG GGGEGEDKVR MMARHSVGAP 660 GEPPGVVLSA TTSVRLPGTL PGRVFDYLRD EQRRGDWDIL ANGEAMQEMD HIAKGQHHGN 720 AVSLLRPNAT SGNQNNMLIL QETCTDSSGC LVVYAPVDVQ SMHVVMNGGD SAYVSLLPSG 780 FAILPDGHND GTLPSPADVG SASPNSAAAA NGGGSNNTGS LVTVAFQILV NNLPTAKLTV 840 ESVDTVSNLL SCTIQKIKSA LQASIISP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 126 | 131 | RKKKKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR09G13080.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK071877 | 0.0 | AK071877.1 Oryza sativa Japonica Group cDNA clone:J013040J18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015696802.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: homeobox-leucine zipper protein ROC6-like | ||||
Swissprot | Q7Y0V7 | 0.0 | ROC6_ORYSJ; Homeobox-leucine zipper protein ROC6 | ||||
TrEMBL | A0A0D9XFV4 | 0.0 | A0A0D9XFV4_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR09G13080.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1203 | 37 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.1 | 0.0 | HD-ZIP family protein |