PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LPERR09G12960.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 159aa MW: 17091.4 Da PI: 8.7702 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.5 | 1.7e-18 | 27 | 73 | 2 | 52 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkk 52 ++ GVr+++ +grWvAeI+d +r r +lg+f+taeeAa+a+++a++ LPERR09G12960.1 27 RFVGVRQRP-SGRWVAEIKD----SaQRVRLWLGTFDTAEEAARAYDEAARF 73 689******.7*********....4456*********************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 7.2E-21 | 27 | 90 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.24 | 27 | 71 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-22 | 27 | 73 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-13 | 27 | 73 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.36E-24 | 28 | 71 | No hit | No description |
SuperFamily | SSF54171 | 7.85E-16 | 28 | 73 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.8E-8 | 28 | 39 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-8 | 50 | 66 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 159 aa Download sequence Send to blast |
MAPQEGGRIG NAGGIVVAAA ARRDRRRFVG VRQRPSGRWV AEIKDSAQRV RLWLGTFDTA 60 EEAARAYDEA ARFALAAVFR RCTPPYVAVE TTVPPSFVVP RRTEAPPPPP PATATATPML 120 DVLVGFDGVD ATGVETTPFR VSSSLIVPST FSFCIDEGF |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved in the symbiotic nodule signaling pathway in response to rhizobial stimulation. Functions as a transcriptional regulator required for root infection by symbiotic rhizobia, infection thread (IT) formation, and nodule development. May coordinate these processes (PubMed:28503742, PubMed:28028038, PubMed:28068194). Functions downstream of the CCAMK-CYCLOPS complex (PubMed:28503742, PubMed:28028038). Probably not involved in arbuscular mycorrhizal (AM) symbiosis (PubMed:28068194). {ECO:0000269|PubMed:28028038, ECO:0000269|PubMed:28068194, ECO:0000269|PubMed:28503742}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LPERR09G12960.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced in nodules 7 days after rhizobial inoculation. {ECO:0000269|PubMed:28028038, ECO:0000269|PubMed:28503742}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | DQ810282 | 2e-58 | DQ810282.1 Oryza brachyantha BAC 0002C07, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020171528.1 | 2e-31 | ethylene-responsive transcription factor ERF095-like | ||||
Swissprot | A0A1X9PY88 | 8e-23 | ERN1_LOTJA; Ethylene-responsive transcription factor ERN1 | ||||
TrEMBL | A0A0D9XFT8 | 1e-107 | A0A0D9XFT8_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR09G12960.1 | 1e-108 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12429 | 26 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G19790.1 | 5e-09 | related to AP2 11 |
Publications ? help Back to Top | |||
---|---|---|---|
|