PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR09G12950.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | ERF | ||||||||
Protein Properties | Length: 233aa MW: 25167.8 Da PI: 4.9514 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54 | 4.1e-17 | 46 | 96 | 1 | 53 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkl 53 + ++GVr++ + grWv+e+r+p g + r +lg+f+ta+ Aa+a++aa+++l LPERR09G12950.1 46 PVFRGVRRRGNAGRWVCEVRVP---GrRGCRLWLGTFDTADAAARAHDAAMLAL 96 579******************9...6445**********************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.8E-13 | 46 | 96 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.572 | 47 | 111 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.6E-14 | 47 | 117 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.79E-15 | 47 | 110 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-24 | 47 | 113 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.7E-5 | 48 | 59 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.7E-5 | 72 | 88 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MCGIKREMSG ESPCSSSPEQ QQHQTVWTSP PKRPAGRTKF RETRHPVFRG VRRRGNAGRW 60 VCEVRVPGRR GCRLWLGTFD TADAAARAHD AAMLALAAGG DSGETCCLNF ADSAWLLAVP 120 SSYRSLADVR HAVAEAVEDF LQRRHHRDDA MSPSSAHTDG DESAATDTDG DDSSSFSSPA 180 NDMAFELDDV LGDMGWDLYY ASLAQGMLME PPAVAAAAAF GDGNVADVPL WSY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Confers resistance to high salt, cold and drought stress (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR09G12950.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF300970 | 1e-126 | AF300970.1 Oryza sativa DRE-binding protein 1A mRNA, complete cds. | |||
GenBank | AF494422 | 1e-126 | AF494422.1 Oryza sativa (japonica cultivar-group) apetala2 domain-containing CBF1-like protein mRNA, complete cds. | |||
GenBank | AK105599 | 1e-126 | AK105599.1 Oryza sativa Japonica Group cDNA clone:001-200-A04, full insert sequence. | |||
GenBank | AK287692 | 1e-126 | AK287692.1 Oryza sativa Japonica Group cDNA, clone: J065128G03, full insert sequence. | |||
GenBank | AP006859 | 1e-126 | AP006859.1 Oryza sativa Japonica Group genomic DNA, chromosome 9, fosmid clone:OSJNOa273B05. | |||
GenBank | AP014965 | 1e-126 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012617 | 1e-126 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. | |||
GenBank | JN561151 | 1e-126 | JN561151.1 Oryza sativa Indica Group DREB1A (DREB1A) gene, complete cds. | |||
GenBank | JQ885955 | 1e-126 | JQ885955.1 Oryza sativa isolate UR14 DRE-binding factor 1A (DREB1A) gene, complete cds. | |||
GenBank | JQ885956 | 1e-126 | JQ885956.1 Oryza sativa isolate UR5 DRE-binding factor 1A (DREB1A) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015610912.1 | 1e-108 | dehydration-responsive element-binding protein 1A | ||||
Swissprot | A2Z389 | 1e-109 | DRE1A_ORYSI; Dehydration-responsive element-binding protein 1A | ||||
TrEMBL | A0A0D9XFT7 | 1e-170 | A0A0D9XFT7_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR09G12950.1 | 1e-170 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP196 | 36 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25470.1 | 3e-28 | C-repeat/DRE binding factor 2 |