PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR09G12940.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family AP2
Protein Properties Length: 684aa    MW: 73517.3 Da    PI: 4.6562
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR09G12940.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.42.7e-1680130153
              AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkl 53 
                      + ++GVr++ + g+Wv+e+r+p   g +  r +lg+f+ta+ Aa+a++aa+++l
  LPERR09G12940.1  80 PVFRGVRRRGNAGKWVCEVRVP---GrRGCRLWLGTFDTADAAARAHDAAMLAL 130
                      579******************9...6445**********************986 PP
2AP230.49.5e-10439474138
              AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgt 38 
                      + ++GVr++ + grWv+e+r+p   g +  r +lg+f  
  LPERR09G12940.1 439 PVFRGVRRRGRAGRWVCEVRVP---GrRGCRLWLGTFAD 474
                      579******************9...6445********86 PP
3AP233.11.4e-105115511355
              AP2  13 grWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      grWv+e+r+p   g +  r +lg+f  ae Aa+a++aa ++l g
  LPERR09G12940.1 511 GRWVCEVRVP---GrRGCRLWLGTFADAETAARAHDAAVLALSG 551
                      9********9...6445*********************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.1E-1280130IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-2481147IPR001471AP2/ERF domain
PROSITE profilePS5103219.5281145IPR001471AP2/ERF domain
SMARTSM003801.0E-1481151IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-1481144IPR016177DNA-binding domain
PfamPF008471.7E-5439473IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-7440479IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.7E-13440478IPR001471AP2/ERF domain
SMARTSM003800.0017440497IPR001471AP2/ERF domain
PROSITE profilePS5103218.136440559IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-21510561IPR001471AP2/ERF domain
PfamPF008471.0E-4510549IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-13510561IPR016177DNA-binding domain
SMARTSM003804.1E-10511565IPR001471AP2/ERF domain
CDDcd000181.58E-14511561No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
MGVLFADYGY YPGCGMLPRT YEDSGDKMHI NELDMEMSGE SWMSSSPCSS SPEQQQHQTV  60
WTSPPKRPAG RTKFRETRHP VFRGVRRRGN AGKWVCEVRV PGRRGCRLWL GTFDTADAAA  120
RAHDAAMLAL AAGGDSGETC CLNFADSAWL LAVPSSYRSL ADVRHAVAEA VEDFLQRRHR  180
RDDDAMSATS SSAPSSSLTD DEESSSSSSS PGTNLAFELD DVMGDMGWDL YYASLAQGML  240
MAPPFAAAAF GDDGEANLAD VMNSSSPSPS SSSGAETDSS SSSSSQNAAA PAPKRPAGRT  300
KFRETRHPVF RGVRRRGGAG RDSAWLLAVP PAVAPSDLAA VRRAATDAVA AFLKRTNAAA  360
NAMDEATSGV SPPPPIIVDN ACSSEMPRES GEGTAATATA ALDMFELDFF GEMDYDMTVW  420
SEPPKRPAGR TKFRETRHPV FRGVRRRGRA GRWVCEVRVP GRRGCRLWLG TFADGDAASS  480
FSSPANDMAF ELDDVLGDMG WDLYYASLAX GRWVCEVRVP GRRGCRLWLG TFADAETAAR  540
AHDAAVLALS GTDACLNFAD SAWLMPPVSV AAGGGAREVK DAVADAVEAF QRQRRRQTPS  600
SSPAETADEY EDDEEMKGFS PAAAIPVVQD GEFELDDAFR WDGMDAGSYY ASLAQGLLVE  660
PPPAAGVWWE DGEIAGSDMA LWSY
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Confers resistance to high salt, cold and drought stress. {ECO:0000269|PubMed:12609047, ECO:0000269|PubMed:16284406}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR09G12940.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt and cold stress. {ECO:0000269|PubMed:12609047}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3009701e-112AF300970.1 Oryza sativa DRE-binding protein 1A mRNA, complete cds.
GenBankAF4944221e-112AF494422.1 Oryza sativa (japonica cultivar-group) apetala2 domain-containing CBF1-like protein mRNA, complete cds.
GenBankAK1055991e-112AK105599.1 Oryza sativa Japonica Group cDNA clone:001-200-A04, full insert sequence.
GenBankAK2876921e-112AK287692.1 Oryza sativa Japonica Group cDNA, clone: J065128G03, full insert sequence.
GenBankAP0068591e-112AP006859.1 Oryza sativa Japonica Group genomic DNA, chromosome 9, fosmid clone:OSJNOa273B05.
GenBankAP0149651e-112AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126171e-112CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
GenBankJN5611511e-112JN561151.1 Oryza sativa Indica Group DREB1A (DREB1A) gene, complete cds.
GenBankJQ8859551e-112JQ885955.1 Oryza sativa isolate UR14 DRE-binding factor 1A (DREB1A) gene, complete cds.
GenBankJQ8859561e-112JQ885956.1 Oryza sativa isolate UR5 DRE-binding factor 1A (DREB1A) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610912.12e-94dehydration-responsive element-binding protein 1A
SwissprotQ64MA11e-95DRE1A_ORYSJ; Dehydration-responsive element-binding protein 1A
TrEMBLA0A0D9XFT60.0A0A0D9XFT6_9ORYZ; Uncharacterized protein
STRINGLPERR09G12940.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.19e-27C-repeat/DRE binding factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Oh SJ,Kwon CW,Choi DW,Song SI,Kim JK
    Expression of barley HvCBF4 enhances tolerance to abiotic stress in transgenic rice.
    Plant Biotechnol. J., 2007. 5(5): p. 646-56
    [PMID:17614953]
  3. Xiao BZ, et al.
    Evaluation of seven function-known candidate genes for their effects on improving drought resistance of transgenic rice under field conditions.
    Mol Plant, 2009. 2(1): p. 73-83
    [PMID:19529831]
  4. Mito T,Seki M,Shinozaki K,Ohme-Takagi M,Matsui K
    Generation of chimeric repressors that confer salt tolerance in Arabidopsis and rice.
    Plant Biotechnol. J., 2011. 9(7): p. 736-46
    [PMID:21114612]
  5. Sun H, et al.
    ENAC1, a NAC transcription factor, is an early and transient response regulator induced by abiotic stress in rice (Oryza sativa L.).
    Mol. Biotechnol., 2012. 52(2): p. 101-10
    [PMID:22161313]
  6. Huang J, et al.
    A TFIIIA-type zinc finger protein confers multiple abiotic stress tolerances in transgenic rice (Oryza sativa L.).
    Plant Mol. Biol., 2012. 80(3): p. 337-50
    [PMID:22930448]
  7. Lourenço T, et al.
    Isolation and characterization of rice (Oryza sativa L.) E3-ubiquitin ligase OsHOS1 gene in the modulation of cold stress response.
    Plant Mol. Biol., 2013. 83(4-5): p. 351-63
    [PMID:23780733]
  8. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  9. Wang ST, et al.
    MicroRNA319 positively regulates cold tolerance by targeting OsPCF6 and OsTCP21 in rice (Oryza sativa L.).
    PLoS ONE, 2014. 9(3): p. e91357
    [PMID:24667308]
  10. Chen M,Zhao Y,Zhuo C,Lu S,Guo Z
    Overexpression of a NF-YC transcription factor from bermudagrass confers tolerance to drought and salinity in transgenic rice.
    Plant Biotechnol. J., 2015. 13(4): p. 482-91
    [PMID:25283804]
  11. Paul S,Gayen D,Datta SK,Datta K
    Dissecting root proteome of transgenic rice cultivars unravels metabolic alterations and accumulation of novel stress responsive proteins under drought stress.
    Plant Sci., 2015. 234: p. 133-43
    [PMID:25804816]
  12. Challam C,Ghosh T,Rai M,Tyagi W
    Allele mining across DREB1A and DREB1B in diverse rice genotypes suggest a highly conserved pathway inducible by low temperature.
    J. Genet., 2015. 94(2): p. 231-8
    [PMID:26174670]
  13. Kan CC,Chung TY,Juo YA,Hsieh MH
    Glutamine rapidly induces the expression of key transcription factor genes involved in nitrogen and stress responses in rice roots.
    BMC Genomics, 2015. 16(1): p. 731
    [PMID:26407850]
  14. Min HJ,Jung YJ,Kang BG,Kim WT
    CaPUB1, a Hot Pepper U-box E3 Ubiquitin Ligase, Confers Enhanced Cold Stress Tolerance and Decreased Drought Stress Tolerance in Transgenic Rice (Oryza sativa L.).
    Mol. Cells, 2016. 39(3): p. 250-7
    [PMID:26674966]
  15. Kakar KU, et al.
    A consortium of rhizobacterial strains and biochemical growth elicitors improve cold and drought stress tolerance in rice (Oryza sativa L.).
    Plant Biol (Stuttg), 2016. 18(3): p. 471-83
    [PMID:26681628]
  16. Huo C, et al.
    Comparative Study of Early Cold-Regulated Proteins by Two-Dimensional Difference Gel Electrophoresis Reveals a Key Role for Phospholipase Dα1 in Mediating Cold Acclimation Signaling Pathway in Rice.
    Mol. Cell Proteomics, 2016. 15(4): p. 1397-411
    [PMID:26747563]
  17. Dou M,Cheng S,Zhao B,Xuan Y,Shao M
    The Indeterminate Domain Protein ROC1 Regulates Chilling Tolerance via Activation of DREB1B/CBF1 in Rice.
    Int J Mol Sci, 2016. 17(3): p. 233
    [PMID:26927068]
  18. Kudo M, et al.
    Double overexpression of DREB and PIF transcription factors improves drought stress tolerance and cell elongation in transgenic plants.
    Plant Biotechnol. J., 2017. 15(4): p. 458-471
    [PMID:27683092]
  19. He X, et al.
    A rice jacalin-related mannose-binding lectin gene, OsJRL, enhances Escherichia coli viability under high salinity stress and improves salinity tolerance of rice.
    Plant Biol (Stuttg), 2017. 19(2): p. 257-267
    [PMID:27718311]