PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR09G12140.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family CO-like
Protein Properties Length: 280aa    MW: 30007.3 Da    PI: 6.2749
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR09G12140.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.31.1e-06346441
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                     ++C+ ++e  + l+C+ ++  lC  C  + H        H ++p
  LPERR09G12140.1  3 WRCEYCGEAAAALHCRADDARLCVACDRHVHAAnplsrrHPRSP 46
                     69*******9*********************5567777787766 PP
2CCT36.91.3e-132452692044
              CCT  20 kirYesRKavAesRpRvKGrFvkqa 44 
                      +irYesRK +A++R RvKGrFvk++
  LPERR09G12140.1 245 HIRYESRKMRADTRRRVKGRFVKST 269
                      7**********************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.0E-10147IPR000315B-box-type zinc finger
CDDcd000211.10E-8347No hitNo description
PROSITE profilePS501199.627547IPR000315B-box-type zinc finger
PfamPF062031.7E-9244268IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MTWRCEYCGE AAAALHCRAD DARLCVACDR HVHAANPLSR RHPRSPLCSS CHARPAASRL  60
AAGDGAGHAT FLCSCCLDGV SGGVPIEAFS GCPAAAELAA SWGIDLAGGG GVRDGDGLEE  120
GFDPGTLPYT SMPAPPTASS GDVGDGKHFT EGNELVWQQT ALSNPACQVW DFNLGKSRDQ  180
DEHSALQLHF GSKDGGFMIK SYNEMIEEVS SSSRKDLQYV YDSTYSFGTE DIVSANIYHL  240
TPKQHIRYES RKMRADTRRR VKGRFVKSTD ILNVSGGDGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR09G12140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1205893e-95AK120589.1 Oryza sativa Japonica Group cDNA clone:J013145I18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610775.14e-60zinc finger protein CONSTANS-LIKE 14
TrEMBLA0A0D9XFH80.0A0A0D9XFH8_9ORYZ; Uncharacterized protein
STRINGLPERR09G12140.20.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.22e-15B-box type zinc finger protein with CCT domain