PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR09G12100.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | NAC | ||||||||
Protein Properties | Length: 249aa MW: 26780.4 Da PI: 10.4519 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 113.2 | 2.8e-35 | 9 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkya...tgkrknratksgyWkatgkdk 90 lppGfrFhPtdeelvv+yL++++ +++l++ vi+++ + ++Pw Lp a+e e yfFs r++++ +g ++r++ sgyWkatg++k LPERR09G12100.2 9 LPPGFRFHPTDEELVVQYLRRRALSRPLPA-AVIPDLhHAAILDPWLLP---GAGEGEAYFFSFRRSAAMgggRGGGRRRKAGSGYWKATGTEK 98 79****************************.889999677888******...447789******9999984444445778999*********** PP NAM 91 evlsk.........kgelvglkktLvfykgrapkgektdWvmheyrl 128 +v+ + +++lvg+k+tLvf +++ p +t Wvmheyrl LPERR09G12100.2 99 PVFLRgfgcgggkqQQQLVGVKTTLVFVRAKPPC--RTGWVMHEYRL 143 *********998777777**********666655..*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.1E-43 | 4 | 175 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 43.128 | 9 | 175 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.6E-24 | 10 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0055114 | Biological Process | oxidation-reduction process | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003824 | Molecular Function | catalytic activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MATAARQQLP PGFRFHPTDE ELVVQYLRRR ALSRPLPAAV IPDLHHAAIL DPWLLPGAGE 60 GEAYFFSFRR SAAMGGGRGG GRRRKAGSGY WKATGTEKPV FLRGFGCGGG KQQQQLVGVK 120 TTLVFVRAKP PCRTGWVMHE YRLAAAAAIA GLKKGGDHSC MSQTGEWVVC RIFLKNNRSS 180 SKRRLTDVDS QTPVTGVHDG VLGHRRQPSP SPSPSSSSCV TVEVSDEEEA EVSSGSINSA 240 PTVASQREA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-32 | 9 | 177 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-32 | 9 | 177 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-32 | 9 | 177 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-32 | 9 | 177 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-32 | 9 | 177 | 20 | 170 | NAC domain-containing protein 19 |
3swm_B | 1e-32 | 9 | 177 | 20 | 170 | NAC domain-containing protein 19 |
3swm_C | 1e-32 | 9 | 177 | 20 | 170 | NAC domain-containing protein 19 |
3swm_D | 1e-32 | 9 | 177 | 20 | 170 | NAC domain-containing protein 19 |
3swp_A | 1e-32 | 9 | 177 | 20 | 170 | NAC domain-containing protein 19 |
3swp_B | 1e-32 | 9 | 177 | 20 | 170 | NAC domain-containing protein 19 |
3swp_C | 1e-32 | 9 | 177 | 20 | 170 | NAC domain-containing protein 19 |
3swp_D | 1e-32 | 9 | 177 | 20 | 170 | NAC domain-containing protein 19 |
4dul_A | 1e-32 | 9 | 177 | 17 | 167 | NAC domain-containing protein 19 |
4dul_B | 1e-32 | 9 | 177 | 17 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR09G12100.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015651404.1 | 1e-93 | NAC domain-containing protein 83 | ||||
Swissprot | Q9FY93 | 1e-45 | NAC83_ARATH; NAC domain-containing protein 83 | ||||
TrEMBL | A0A0D9XFH3 | 0.0 | A0A0D9XFH3_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI09G11680.1 | 1e-110 | (Oryza meridionalis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 1e-24 | NAC domain containing protein 83 |
Publications ? help Back to Top | |||
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