PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR09G11150.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 707aa    MW: 78297.8 Da    PI: 4.4725
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR09G11150.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM152.81.6e-47111372128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                      ppGfrF+Ptdeelv ++Lk+++++ + +    i++vd+yk++P++Lp k ++++++k+w+fFs+ d+ky++g+r++r+t +gyWkatgkd++++
  LPERR09G11150.1  11 PPGFRFSPTDEELVLYFLKRRIASARPTP--YIADVDVYKSHPSHLPeKsALRTGDKQWFFFSRMDRKYPNGSRASRTTGEGYWKATGKDRSIC 102
                      8**********************999555..6**************9535777899************************************** PP

              NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++g++vg kktLv+++grap+ge+tdWvmhey++
  LPERR09G11150.1 103 NNGGAAVGSKKTLVYHHGRAPRGERTDWVMHEYTV 137
                      *********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-528160IPR003441NAC domain
PROSITE profilePS5100551.86110160IPR003441NAC domain
PfamPF023652.7E-2411136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
MGRENPPLRW PPGFRFSPTD EELVLYFLKR RIASARPTPY IADVDVYKSH PSHLPEKSAL  60
RTGDKQWFFF SRMDRKYPNG SRASRTTGEG YWKATGKDRS ICNNGGAAVG SKKTLVYHHG  120
RAPRGERTDW VMHEYTVLAD ALPPAARERE VYALYKLFHK SGAGPKNGEQ YGAPFREEDW  180
LDDDDEVAAL PTATTTSGRA ATMEEERAEC EVPSGDLDEL LMLMDNDQER VQPQQSDSST  240
PVSSQVEIQR GIEQQSDFLT PSQVQIQSGL RQGWINDDGG KSDVARATTT SDRALLMAEK  300
TCTELPLDGL EQLLMQISDD QQTVEMFSGF SASIPQSQIQ HDDYQGFVGV YREEVGVPDS  360
TTVVHNAVVT AECTGHELHD IEGLLMQISN DQENAELQPD FSTPDPLHDC HQVAFGDFQG  420
DQRVAFSIAS CSTTVQESPN FDMQTGPSIQ ITESILTTEP TSRETNTAEE TSASRSMSGL  480
GSYDMQDFDG EFLEINDFFD LEESEQIMGG TTSLNLIAAD DGMFDSLKFS DAPMFLPGPF  540
DTPGVVAENQ YVEFGASGIQ NQGFQLATEL LTHNRVGFNV RSHMKDNNVV FSSHRSDTSV  600
IHRVNEEPPN RSSSASPSWF NAALSALLDS VPSSPAMAAE NISLNRTIQR ISSFRSQQIA  660
REEVSTTIIH TRRRGGGLIF IPLMVLLVAV MWTFTNGSAV KFLKGLW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-41813513138Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR09G11150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611740.10.0NAC domain-containing protein 17 isoform X1
TrEMBLA0A0D9XF700.0A0A0D9XF70_9ORYZ; Uncharacterized protein
STRINGLPERR09G11150.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91282840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.11e-70NAC domain containing protein 17