PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR09G10040.2

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

bHLH

Protein Properties

Length: 436aa MW: 46039.1 Da PI: 6.1516

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR09G10040.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.7	1.2e-09	265	313	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq LPERR09G10040.2 265 NSHSLAERLRREKISERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 313 58***********************9....556***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.41E-17	260	330	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.05E-11	260	317	No hit	No description
PROSITE profile	PS50888	15.65	262	312	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-16	263	329	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.2E-7	265	313	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.2E-11	268	318	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence Send to blast
MDMNESSEKG MDSNASSGPG NGIPVEWQSQ FSGAFACQPS SAAQHHQQQH AMMDSFTAAA 60 SAGLWASSDV VAPPRAGAAG FLAPVPGFLQ QGLGHFPAVD TGFIERAARS TCYGGVAGGM 120 MGAGGAYGGA DHQSMGDAFG GATEGLMEHH RNDGSNDKAE QEFAGNGHDE MPSSELAGGD 180 CSSKGSDSKK RRRPNEVMGA DQVHSSNLPA DSANESVHSK DKGEESSPAT TTNGGKSKGK 240 GAKETSESQK EEYIHVRARR GQATNSHSLA ERLRREKISE RMKLLQDLVP GCSKVTGKAV 300 MLDEIINYVQ SLQRQVEFLS MKLATVNPRL DLNIEGLLSK DLIRFPGVPS SSIGFSPEMM 360 HPQLQLSQPG LIQGGGAGMT NPDVFRRIIQ AQLGAKDGSQ MPHALNGSFS DVSQMAYPSL 420 GSQDLSIRPS QDGFQM

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence Send to blast

MDMNESSEKG MDSNASSGPG NGIPVEWQSQ FSGAFACQPS SAAQHHQQQH AMMDSFTAAA  60
SAGLWASSDV VAPPRAGAAG FLAPVPGFLQ QGLGHFPAVD TGFIERAARS TCYGGVAGGM  120
MGAGGAYGGA DHQSMGDAFG GATEGLMEHH RNDGSNDKAE QEFAGNGHDE MPSSELAGGD  180
CSSKGSDSKK RRRPNEVMGA DQVHSSNLPA DSANESVHSK DKGEESSPAT TTNGGKSKGK  240
GAKETSESQK EEYIHVRARR GQATNSHSLA ERLRREKISE RMKLLQDLVP GCSKVTGKAV  300
MLDEIINYVQ SLQRQVEFLS MKLATVNPRL DLNIEGLLSK DLIRFPGVPS SSIGFSPEMM  360
HPQLQLSQPG LIQGGGAGMT NPDVFRRIIQ AQLGAKDGSQ MPHALNGSFS DVSQMAYPSL  420
GSQDLSIRPS QDGFQM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR09G10040.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK121418	0.0	AK121418.1 Oryza sativa Japonica Group cDNA clone:J023133H05, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015612420.1	0.0	transcription factor bHLH49 isoform X2
TrEMBL	A0A0D9XES5	0.0	A0A0D9XES5_9ORYZ; Uncharacterized protein
STRING	LPERR09G10040.1	0.0	(Leersia perrieri)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	3e-54	bHLH family protein