PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR09G07020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | NAC | ||||||||
Protein Properties | Length: 215aa MW: 24060.2 Da PI: 5.3234 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 76.8 | 4.9e-24 | 12 | 93 | 10 | 92 |
NAM 10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 td+elv++yL++k ++k+l++ e ik+ diyk++ wdLp ++++ kewyf++krd+ky+++ r++r+t +g+Wkatg+d ++ LPERR09G07020.1 12 TDDELVNFYLRRKDQQKPLSI-ELIKSPDIYKYDTWDLPVFASSGGKEWYFYCKRDRKYQNSLRPTRVTGAGFWKATGTDSKL 93 8********************.89***************8788899*********************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 19.686 | 3 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.1E-9 | 12 | 92 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 9.15E-25 | 12 | 91 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MVEVIWTRGC TTDDELVNFY LRRKDQQKPL SIELIKSPDI YKYDTWDLPV FASSGGKEWY 60 FYCKRDRKYQ NSLRPTRVTG AGFWKATGTD SKLSICFGEF LLLSRSCNTD NSVEQSAVPA 120 MAAAEARQFT CDGSSCKVIN FQCSPSLTHQ SDKDNHSCPV TLLFETQTLL TLSVATSPLL 180 RITPGITNGI YEASSNIAFG QAESCNGYEV EWVIP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-23 | 8 | 94 | 20 | 106 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR09G07020.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0D9XDP0 | 1e-160 | A0A0D9XDP0_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR09G07020.1 | 1e-161 | (Leersia perrieri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26870.1 | 2e-39 | NAC family protein |