PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR09G06940.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 282aa    MW: 30700.3 Da    PI: 7.0923
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR09G06940.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM144.36.9e-45121511128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL..pk.....kvkaeekew.yfFskrdkkyatgkrknratksgyWkat 86 
                      lppGfrF+Ptd elv +yL++k+++  ++   +i+++diy vePwdL  p      + +a e+++ yfF+ r+ + ++g r++rat++gyWk+t
  LPERR09G06940.1  12 LPPGFRFRPTDGELVAHYLTRKTADAAFTS-AAIRDADIYAVEPWDLlpPLpppprQSAAAEERCgYFFCARRLRWPSGVRTSRATAAGYWKST 104
                      79*************************999.78**************6422677764444444446**************************** PP

              NAM  87 gkdkevlsk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      g+dk+v++      +g++vg+kktLvfy+grap+gekt+Wvmheyrl
  LPERR09G06940.1 105 GRDKAVVVLdaaggGGREVGVKKTLVFYRGRAPRGEKTSWVMHEYRL 151
                      ******998888888889***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.26E-499186IPR003441NAC domain
PROSITE profilePS5100550.79812188IPR003441NAC domain
PfamPF023651.9E-2613151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MAGDCHASPS PLPPGFRFRP TDGELVAHYL TRKTADAAFT SAAIRDADIY AVEPWDLLPP  60
LPPPPRQSAA AEERCGYFFC ARRLRWPSGV RTSRATAAGY WKSTGRDKAV VVLDAAGGGG  120
REVGVKKTLV FYRGRAPRGE KTSWVMHEYR LLHDGGAGDG VVSSSPTTAT TLTGGARSEW  180
VICRVFDRKT TTSGNNNGKD QHHLRPCDDH HLGSSPAPAF CDDGSGHARS SFTSANNAMA  240
PRDHLININM GDGYEEELLM NYSSSAFHLP ELLEYESFLF DL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-381219015170Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR09G06940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611185.11e-109NAC domain-containing protein 79
TrEMBLA0A0D9XDN00.0A0A0D9XDN0_9ORYZ; Uncharacterized protein
STRINGLPERR09G06940.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP153521618
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.16e-50NAC domain containing protein 58