PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR09G03520.4
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 270aa    MW: 30397.1 Da    PI: 4.9242
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR09G03520.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.88.6e-1667116154
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                      s+y+GVr+++ +g+W+AeIrdp +   r r +lg+f+++  Aa+a+++  +k++
  LPERR09G03520.4  67 SKYRGVRRRS-WGKWAAEIRDPLT---RSRKWLGTFDSEAAAAAAYDRESEKFR 116
                      89*****887.**********854...4**********8889999988766665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.92E-1667117IPR016177DNA-binding domain
PfamPF008474.6E-967110IPR001471AP2/ERF domain
CDDcd000182.46E-1967116No hitNo description
Gene3DG3DSA:3.30.730.107.1E-2168117IPR001471AP2/ERF domain
PROSITE profilePS5103219.50668125IPR001471AP2/ERF domain
SMARTSM003801.3E-1968131IPR001471AP2/ERF domain
PRINTSPR003673.9E-86980IPR001471AP2/ERF domain
PRINTSPR003673.9E-891107IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MVPSSQKIRI FCSDPDATDS DEDDQKDKRL IGEILIHMDS KTSKTVVKTH VQCGTKIAKD  60
SDKEPTSKYR GVRRRSWGKW AAEIRDPLTR SRKWLGTFDS EAAAAAAYDR ESEKFRAQLM  120
AMKAQSSLSE GEDLSSSVTM SCVSSSQSCE QKTQAKPQVR KRVSVEINHE IVEQKIQAKP  180
QSCRRVSVEI NHEIVDEHLL NFSSIPKDKD AFPISDFVGM TDELPGDDYI GLADISHLPL  240
PTEDPKFDLD AELNWDGFDF DSLEKDLNLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-11671181365Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR09G03520.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651273.11e-120ethylene-responsive transcription factor ERF117
RefseqXP_015651274.11e-120ethylene-responsive transcription factor ERF117
RefseqXP_015651275.11e-120ethylene-responsive transcription factor ERF117
RefseqXP_015651276.11e-120ethylene-responsive transcription factor ERF117
TrEMBLA0A0D9XCC90.0A0A0D9XCC9_9ORYZ; Uncharacterized protein
STRINGLPERR09G03520.20.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.22e-16ERF family protein