PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR09G03520.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 367aa    MW: 40836.2 Da    PI: 5.0165
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR09G03520.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.11.4e-15129177153
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 
                      s+y+GVr+++ +g+W+AeIrdp +   r r +lg+f+++  Aa+a+++  +k+
  LPERR09G03520.2 129 SKYRGVRRRS-WGKWAAEIRDPLT---RSRKWLGTFDSEAAAAAAYDRESEKF 177
                      89*****887.**********854...4**********888899998766666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.52E-19129178No hitNo description
PfamPF008478.2E-9129171IPR001471AP2/ERF domain
SuperFamilySSF541716.41E-16129179IPR016177DNA-binding domain
PROSITE profilePS5103219.506130187IPR001471AP2/ERF domain
SMARTSM003801.3E-19130193IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-20130179IPR001471AP2/ERF domain
PRINTSPR003676.5E-8131142IPR001471AP2/ERF domain
PRINTSPR003676.5E-8153169IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MTNPSSPPKI AVDLCRLLCC CSMVLTSPRR HRIPLAPSSS ELKLGRGAQE RKNIPSESPV  60
VMMVPSSQKI RIFCSDPDAT DSDEDDQKDK RLIGEILIHM DSKTSKTVVK THVQCGTKIA  120
KDSDKEPTSK YRGVRRRSWG KWAAEIRDPL TRSRKWLGTF DSEAAAAAAY DRESEKFRAQ  180
LMAMKAQSSL SEGEDLSSSV TMSCVSSSQS CEQKTQAKPQ VRKRVSVEIN HEIVEQKIQA  240
KPQSCRRVSV EINHEIVDEH LLNFSSIPKD KGIPVDAFLG RIDELPVSNY AGLADEIPPD  300
DFTILADAFP ISDFVGMTDE LPGDDYIGLA DISHLPLPTE DPKFDLDAEL NWDGFDFDSL  360
EKDLNLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-101291801365Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR09G03520.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651273.11e-144ethylene-responsive transcription factor ERF117
RefseqXP_015651274.11e-144ethylene-responsive transcription factor ERF117
RefseqXP_015651275.11e-144ethylene-responsive transcription factor ERF117
RefseqXP_015651276.11e-144ethylene-responsive transcription factor ERF117
TrEMBLA0A0D9XCC70.0A0A0D9XCC7_9ORYZ; Uncharacterized protein
STRINGLPERR09G03520.20.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50203763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.27e-16ERF family protein