PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR09G02990.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | NAC | ||||||||
Protein Properties | Length: 426aa MW: 47536.3 Da PI: 5.8286 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 63 | 9.1e-20 | 13 | 138 | 8 | 126 |
NAM 8 hPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyat.gkrknr.atksgyWkatgkdkevlsk 95 hPt+ el v++L++++++ k++++++i+e+d+y+v+P dL + +++++ wyfFs+ ++++ + r+ + a + g W++ k+v ++ LPERR09G02990.1 13 HPTELELAVKHLNPRAHRIKTNESNFIHEADVYDVDPADLTAkfppAHATDGVYWYFFSPVRNQAGRrRVRSVKsADNGGCWHSEAGVKAVEDE 106 8*****************99999899**************84366544456669*****998876531334444345699************** PP NAM 96 kgelvglkktLvfy.kgrapkgektdWvmhey 126 +++ vg ++ + f kg++ k +t W+m e LPERR09G02990.1 107 HKRRVGHRQFFSFTkKGDDGKRYRTGWIMVEI 138 *************9556888889******996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 28.131 | 6 | 155 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.05E-27 | 13 | 155 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-10 | 13 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 426 aa Download sequence Send to blast |
MVDACQSVSS SRHPTELELA VKHLNPRAHR IKTNESNFIH EADVYDVDPA DLTAKFPPAH 60 ATDGVYWYFF SPVRNQAGRR RVRSVKSADN GGCWHSEAGV KAVEDEHKRR VGHRQFFSFT 120 KKGDDGKRYR TGWIMVEIGL DHEPNDVVLC KVYKTPRKPS GVMPSAMMEI HGEKRKMTDD 180 DAELPPQQRR RLLAEEETQE DGSEENSGES STVPSTLADV ADLADDDDVG RLEETTSSDD 240 DDDDCVMLPD PPSQGEVVST QRETLPNTIG DGTVADDDNC RHQRSAVPDL NIDATMSEED 300 KHEDHYARNG RQHGSTLGSI TKETTSTSNS TMAATERITS TRSIPDECRR RHTLKLHMVN 360 DGMEQQRQQA ATPAWPYGGG GRLQWQQGQR APCFYIVVRP CAAHSSLRYG TTYRCGCRVT 420 GSFSKS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR09G02990.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0D9XC60 | 0.0 | A0A0D9XC60_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR09G02990.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP17457 | 9 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.1 | 7e-09 | NAC domain containing protein 35 |