PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G20450.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 668aa    MW: 72745.4 Da    PI: 4.4162
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G20450.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.62e-52311591129
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      l+pGfrFhPtdeelv++yLk+kv g++l++ ++i+evd+ykvePwdLp  +++++++++wyfFs+ d+k+a+  r+nrat+ gyWk+tgkd+ev
  LPERR08G20450.1  31 LAPGFRFHPTDEELVSYYLKRKVLGRPLKV-DAIAEVDLYKVEPWDLPsrSRLRSRDSQWYFFSRLDRKHANRARTNRATAGGYWKTTGKDREV 123
                      579***************************.99**************95338888999************************************ PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                       + + ++vg kktLvf+ grapkge+t+Wvmheyrle
  LPERR08G20450.1 124 RH-GPRTVGFKKTLVFHAGRAPKGERTNWVMHEYRLE 159
                      **.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.24E-6023176IPR003441NAC domain
PROSITE profilePS5100558.66631176IPR003441NAC domain
PfamPF023654.6E-2833158IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0009962Biological Processregulation of flavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MNHPSSSSSS APPAAGAAAA AAPAAAEATS LAPGFRFHPT DEELVSYYLK RKVLGRPLKV  60
DAIAEVDLYK VEPWDLPSRS RLRSRDSQWY FFSRLDRKHA NRARTNRATA GGYWKTTGKD  120
REVRHGPRTV GFKKTLVFHA GRAPKGERTN WVMHEYRLEG EGIPQDSFVV CRIFQKAGPG  180
PQNGAQYGAP FVEEEWEEDV GLLPVEERDN SDKDNSGDQD ISGAMEKGYL QMSDLVQNMS  240
GQNENGTIAL PVLDNSNNSN HSEDVDRNSG DILSDQNLGS NFFNYVEPGE QNGFVLNENM  300
LSNASAGDVF NSSSPNDGFL ELKDFADVAN WENPMVNEST IWPSDGWPWK TPDSVEAVNG  360
AGNEFSPFAG EQTFQPDELE QLLQSLQEDT PMGSGVSDPT HSSVTNLVKP EDDSLMFYDA  420
PFDSTMCDDG FGQLNGYLGS PATNLSGIDI VDDGMPYYDA VDDNLFNDLL GSVQPSVGSS  480
SHAFSGPVLT QEVNNTTYSY SPAQKVLEPN FVVGAPPSAR LPEAGSQINY VVLPDSQTKS  540
NSMGNRFVKV LGKRLDSISA PPAFAAEFPS SLRKSLAPIS GAHHNTIRLS AEVISIGSLT  600
PASQDKWSLE KDEGMELIHF SAGFEPDPRV HCGCNTITSV LRGGFCLFFF SAIMLLVSYE  660
VGMCIYGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-48261769168Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00059PBMTransfer from AT5G04410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G20450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0996290.0AK099629.1 Oryza sativa Japonica Group cDNA clone:J013057D07, full insert sequence.
GenBankAK1207730.0AK120773.1 Oryza sativa Japonica Group cDNA clone:J023008J18, full insert sequence.
GenBankKF2802620.0KF280262.1 Oryza sativa Japonica Group NAC transcription factor (NAC40) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006660391.10.0PREDICTED: uncharacterized protein LOC102710047
TrEMBLA0A0D9XAY40.0A0A0D9XAY4_9ORYZ; Uncharacterized protein
STRINGLPERR08G20450.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP71073650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.11e-70NAC domain containing protein 2