PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G19100.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 271aa    MW: 28899.8 Da    PI: 6.8715
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G19100.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.24e-10105149554
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      h e+Er+RR+++N +f  Lr  +P        +++Ka+ L  A  YI +L
  LPERR08G19100.1 105 HVEAERQRREKLNRRFCDLRAAVPVV-----SRMDKASLLADAAAYIVDL 149
                      889**********************5.....49**************777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.7100149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-14105159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-13105161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-7105149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.83E-9105153No hitNo description
SMARTSM003531.1E-9106155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MDELVSPYNS SCSGTAFPAM LELDFCDVPD QWLLGLNVVD DDAMAAWAAP PSRSVSSDVV  60
SSIPLSSATV IIREERNKTT PTRRRGRKPA GSTRGGGGAA PPIGHVEAER QRREKLNRRF  120
CDLRAAVPVV SRMDKASLLA DAAAYIVDLR RRVNSLEAAA AAAARIDNTA AAGDGVEEDD  180
GRLEVRMVGR DAAAVRLTTR AETRHAAARM MCALRALDLA VQHASVTRVG GGGATVQDVM  240
VDVPAAFHDE ACLRAALLHM LRHHDTTAVD V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-1798158262Transcription factor MYC2
5gnj_B4e-1798158262Transcription factor MYC2
5gnj_E4e-1798158262Transcription factor MYC2
5gnj_F4e-1798158262Transcription factor MYC2
5gnj_G4e-1798158262Transcription factor MYC2
5gnj_I4e-1798158262Transcription factor MYC2
5gnj_M4e-1798158262Transcription factor MYC2
5gnj_N4e-1798158262Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G19100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004974086.26e-74transcription factor MYC2
TrEMBLA0A0D9XAF10.0A0A0D9XAF1_9ORYZ; Uncharacterized protein
STRINGLPERR08G19100.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.11e-18bHLH family protein