PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR08G19020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 304aa MW: 33165.8 Da PI: 5.1894 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 38.1 | 1.9e-12 | 10 | 55 | 2 | 46 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-.TTSEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifs.stgkl 46 i+++ +r++tf +R++g+ KK + +LCd++v +i ++ g++ LPERR08G19020.1 10 LIDDEKKRKTTFKNRLKGLVKKVKQFETLCDVDVFLICIAgAGGEV 55 699********************************99765044554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.4E-8 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 14.914 | 1 | 52 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.41E-16 | 1 | 79 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 2.01E-15 | 3 | 80 | No hit | No description |
PRINTS | PR00404 | 4.7E-5 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.4E-13 | 11 | 55 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.7E-5 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.7E-5 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MPRTKLVLKL IDDEKKRKTT FKNRLKGLVK KVKQFETLCD VDVFLICIAG AGGEVVTTWP 60 ADRAAVERLI DRLRATPPAK IREVHTTETF LQDDLGKQRR NLIKARAAGE LPSWDSSLDK 120 LDADGLSNLY DALSEKLERA HRRIAALGGG GGVALPEIGF EFPFAGFASS SSNTGLTQFY 180 YPLHDVTLPV THMPPPLCLT YDQMPPPPAI AAAPFEFMNG NAYATNYIEH GGEATTTAGF 240 LDDHCQGFVA GEGYNGDVLG HGFAVAGAGY DLDLECCMMN SDVWPMMNTI ENPMCSNFQG 300 GFQI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR08G19020.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0D9XAE2 | 0.0 | A0A0D9XAE2_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR08G19020.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14351 | 18 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G55690.1 | 2e-16 | M-type_MADS family protein |