PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G17180.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family SBP
Protein Properties Length: 1139aa    MW: 124416 Da    PI: 7.5537
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G17180.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.21.5e-40178255178
                      --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
              SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                      +Cqv++C+adl++ak+yhrrhkvCevh k++++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+
  LPERR08G17180.1 178 MCQVDDCRADLTNAKDYHRRHKVCEVHGKTTKALVGNQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 255
                      6**************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.107.1E-34171240IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.017176253IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.96E-37177256IPR004333Transcription factor, SBP-box
PfamPF031102.2E-29179252IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1139 aa     Download sequence    Send to blast
MQREVGPQVA PPMFLHQIQQ LPPHATTAAK KRGNPWPAAS AAAAAGGGNW NPRMWDWDSR  60
ALTAKPSSDA MRVNGVLTQQ PQPSPAAKAS EPPRQGGGGG GLNLQLGLRE DAATPMDVSP  120
AATTVSSSPS PPPSSAPAQE PVVRPSKRVR SGSPGSTSGG GGGGGGGGGG NSGGSYPMCQ  180
VDDCRADLTN AKDYHRRHKV CEVHGKTTKA LVGNQMQRFC QQCSRFHPLS EFDEGKRSCR  240
RRLAGHNRRR RKTQPTDVAS QLLLPGNQEN AANRTQDIVN LITVIARLQG GNVGKLPSIP  300
PIPDKDNLVQ IISKINSINN ANSASRSPPS EAVDLNASHG QQQDSDQRTT NGFDKQANGL  360
DKQANGFDKQ ANGFDKQANG FDKQAVPSTM DLLTVLSTAL ATSNPDSNTS QSQGSSDSSG  420
NNKSKSHSTE PPGVVNSHEK SIQIFSATRT NGTLESPPEM YKQPDQETHP YLSLRLFGST  480
EEDVPCKMDT GNKYLSSESS NPLDERSPSS SPPITHKFFP IRSVDENARI ADYGEDTATV  540
EVSTSRAWHP PPLELFKGSE RPIENGSPPN PAYQSCYTST SCSDHSPSTS NSDGQDRTGR  600
IIFKLFGKEP STIPGNLRGE IVNWLKHSPT EMEGYIRPGC LVLSMYLSMP AIAWDELEEN  660
LLQRVNTLVH GSDLDFWRKG RFLVRTDSQL VSYKDGATRL SKSWRTWNTP ELTFVSPIAV  720
VGGKKTSLIL KGRNLTIPGT QIHCTSTGKY ISKEVLCSAY PGTIYDDSGV ETFDLPGEPH  780
LILGRYFIEV ENRFRGNSFP VIIANSSVCQ ELRSLEAELE GSQFVDGSSD DHAHDARRLK  840
PKDEVLHFLN ELGWLFQKLA ASTSAEKSDT SGLDLMYFST ARFRYLLLFS SERDWCSLTK  900
TLLEILAKRS LASDELSQET LEMLSEIHLL NRAVKRKSSR MTHLLVQFVV VCPDDSKLYP  960
FLPNVAGPGG LTPLHLAASI EDVEDIVDAL TDDPQQIGLT CWHSVLDDDG QSPETYAKLR  1020
NNNSYNELVA RKLVDRKNNQ VTIMVGKEEI HMDQPGNVGE KNKSAIQALQ IRSCNQCAIL  1080
DSGLLRRPLH SRGLLARPYI HSMLAIAAVC VCVCVFMRAL LRFNSGRSFK WERLDFGTI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A7e-33167252184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00155DAPTransfer from AT1G20980Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G17180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2420700.0AK242070.1 Oryza sativa Japonica Group cDNA, clone: J075133L10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649921.10.0squamosa promoter-binding-like protein 15
SwissprotA2YX040.0SPL15_ORYSI; Squamosa promoter-binding-like protein 15
SwissprotQ6Z8M80.0SPL15_ORYSJ; Squamosa promoter-binding-like protein 15
TrEMBLA0A0D9X9P70.0A0A0D9X9P7_9ORYZ; Uncharacterized protein
STRINGLPERR08G17180.30.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54563853
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20980.11e-178squamosa promoter binding protein-like 14