PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR08G17020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | NAC | ||||||||
Protein Properties | Length: 339aa MW: 36810.6 Da PI: 7.3592 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.5 | 4.5e-52 | 26 | 163 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeel+++yL++kv + + + v i+evd++++ePwdLp++++ +e+ewyfFs rd+ky+tg r+nrat +gyWkatgkd+ev+ LPERR08G17020.1 26 LPPGFRFHPTDEELITFYLAAKVFNGGNLA-GVdIAEVDLNRCEPWDLPETARMGEREWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVV 118 79********************99999666.555***************9889999************************************** PP NAM 94 sk..........kgelvglkktLvfykgrapkgektdWvmheyrl 128 s+ +g l+g+kktLvfykgrap+gekt+Wv+heyrl LPERR08G17020.1 119 SNaaggggggggGGGLIGMKKTLVFYKGRAPRGEKTKWVLHEYRL 163 *988888777766667***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-62 | 18 | 186 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.576 | 26 | 186 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.0E-27 | 27 | 163 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010014 | Biological Process | meristem initiation | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MTGVDALWEM IGEEMAAAAA GGEHGLPPGF RFHPTDEELI TFYLAAKVFN GGNLAGVDIA 60 EVDLNRCEPW DLPETARMGE REWYFFSLRD RKYPTGLRTN RATGAGYWKA TGKDREVVSN 120 AAGGGGGGGG GGGLIGMKKT LVFYKGRAPR GEKTKWVLHE YRLDGEFAAA RRSTKEEWVI 180 CRIFHKVGDQ YSKMMMMKSP SYYPYLPVSH HPSSIFHDLP PVPFPNPSGC TSLLPFHHDL 240 PIPHSPLQAN KNSSTSFNGG FVFPNAVADQ PNTIASSNNA AAFPCFTSTT VTGKVGPQAQ 300 LGVNAGQQEA PPPPTWMDAY MQHSGFLYEM GPPAVPRGA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-48 | 20 | 186 | 9 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00241 | DAP | Transfer from AT1G76420 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR08G17020.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015648828.1 | 1e-174 | protein CUP-SHAPED COTYLEDON 3 | ||||
Swissprot | Q9S851 | 2e-88 | NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3 | ||||
TrEMBL | A0A0D9X9N0 | 0.0 | A0A0D9X9N0_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR08G17020.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11237 | 33 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76420.1 | 2e-83 | NAC family protein |
Publications ? help Back to Top | |||
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