PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G16000.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family M-type_MADS
Protein Properties Length: 359aa    MW: 39014.8 Da    PI: 4.4181
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G16000.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.24.3e-28958150
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                     krien++nrqvtfskRrng++KKA+ELSvLCd++va+++fs++g+l  +s
  LPERR08G16000.1  9 KRIENTTNRQVTFSKRRNGLIKKAYELSVLCDIDVALLMFSPSGRLSHFS 58
                     79********************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.534161IPR002100Transcription factor, MADS-box
SMARTSM004326.1E-38160IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.02E-30286IPR002100Transcription factor, MADS-box
CDDcd002659.39E-39275No hitNo description
PRINTSPR004042.9E-25323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003199.4E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-253859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MGRVKLPIKR IENTTNRQVT FSKRRNGLIK KAYELSVLCD IDVALLMFSP SGRLSHFSGS  60
RGVEDVILRY MNLSEHDRGE AIPNREYLIS MLQRLKRESD MATQLANPGA LNEKIEEMQQ  120
EIYSSQQQLQ ITEDRLRLFE PDPAALGSTS DIDGREKFLM DLLTRVIEKK NNLLSSHMPS  180
FDATAAGMQG TDATQQMYVS QADGMGTFGG DAAMWAPDVG ADPGHQMFGA SDPLIYLRDH  240
DVYDANSHVA GLHAAAGGEA AACVGDVAAG DDAWRQEYTC TELLSTLIPT TPFPIMPHCL  300
GAEEQYLSME EQGMVAAAAA QETVEASTAS CSYVPSDETT GTPPVMAYDG NAPPPANIA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-18197194MEF2 CHIMERA
6byy_B3e-18197194MEF2 CHIMERA
6byy_C3e-18197194MEF2 CHIMERA
6byy_D3e-18197194MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G16000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFM9565040.0FM956504.1 Oryza sativa Japonica Group mRNA for MADS62 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025883256.10.0agamous-like MADS-box protein AGL66
TrEMBLA0A0D9X9980.0A0A0D9X998_9ORYZ; Uncharacterized protein
STRINGLPERR08G16000.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49533360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.12e-61AGAMOUS-like 104