PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR08G15690.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

Dof

Protein Properties

Length: 263aa MW: 27863.9 Da PI: 5.8679

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR08G15690.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.6	2.8e-38	49	107	4	62
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 + +cprC+s++tkfCy+nny++sqPr+fCk+CrryWtkGG+lrnvPvGgg+rk+ +ss LPERR08G15690.1 49 EGDPCPRCESRDTKFCYFNNYNTSQPRHFCKGCRRYWTKGGTLRNVPVGGGTRKKPSSS 107 5679**************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-26	49	102	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.332	51	105	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.6E-31	52	103	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	53	89	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MQEQQAEPGR RPAQQFPTVD LRRPKGYAAA PASPQPAAPA PTPPPAAAEG DPCPRCESRD 60 TKFCYFNNYN TSQPRHFCKG CRRYWTKGGT LRNVPVGGGT RKKPSSSSSS SSSSSAASVP 120 AAKRQKPSKK RRVDTPPEPA ADTSVPTPTA ADAAGDSINA TKEPTEKKTL TTPPPAPDTA 180 SEITTELVVP AVEDDSFTDL LQPDSAAVTL GLDFSDYPSV TKGLADPDLH FEWPPATFDM 240 ASLWPASAGF ADPDPTALFL NLP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	100	125	RKKPSSSSSSSSSSSAASVPAAKRQK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence at the MNF1-binding site.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR08G15690.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK241364	3e-92	AK241364.1 Oryza sativa Japonica Group cDNA, clone: J065152E11, full insert sequence.
GenBank	AP004620	3e-92	AP004620.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0605H02.
GenBank	AP014964	3e-92	AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBank	CP012616	3e-92	CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015650493.1	1e-116	dof zinc finger protein MNB1A
Swissprot	P38564	4e-69	MNB1A_MAIZE; Dof zinc finger protein MNB1A
TrEMBL	A0A0D9X963	0.0	A0A0D9X963_9ORYZ; Uncharacterized protein
STRING	LPERR08G15690.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	5e-29	DOF zinc finger protein 1

Publications ? help Back to Top
Yanagisawa S,Izui K Molecular cloning of two DNA-binding proteins of maize that are structurally different but interact with the same sequence motif. J. Biol. Chem., 1993. 268(21): p. 16028-36 [PMID:8340424]