PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR08G15530.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

MYB

Protein Properties

Length: 338aa MW: 35889.6 Da PI: 7.9397

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR08G15530.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.2	4.5e-19	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+l++++++ G g+W+t +r g++R++k+c++rw +yl LPERR08G15530.1 14 KGPWTPEEDEKLLQYIQKNGHGSWRTLPRLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	47	6e-15	67	142	1	48
TSSS-HHHHHHHHHHHHHTTTT.............................-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.............................tWktIartmgkgRtlkqcksrwqkyl 48 rg+++++E++ +++++ lG++ +W++Ia +++ gRt++++k++w+++l LPERR08G15530.1 67 RGKFSQDEEQTILHLHSILGNKydpvhrsmhrirssirheteldrnglfprRWSAIATHLP-GRTDNEIKNFWNTHL 142 89*********************************************************.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.4E-25	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	25.105	9	65	IPR017930	Myb domain
SMART	SM00717	3.4E-15	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	5.0E-17	14	61	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.58E-24	14	65	IPR009057	Homeodomain-like
CDD	cd00167	5.34E-12	16	61	No hit	No description
SuperFamily	SSF46689	5.98E-6	51	97	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.8E-23	65	147	IPR009057	Homeodomain-like
SMART	SM00717	4.0E-13	66	144	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	11.028	66	146	IPR017930	Myb domain
Pfam	PF00249	1.1E-12	67	142	IPR001005	SANT/Myb domain
CDD	cd00167	2.08E-8	69	142	No hit	No description
SuperFamily	SSF46689	2.58E-24	115	143	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MGRSPCCDES GLKKGPWTPE EDEKLLQYIQ KNGHGSWRTL PRLAGLNRCG KSCRLRWTNY 60 LRPDIKRGKF SQDEEQTILH LHSILGNKYD PVHRSMHRIR SSIRHETELD RNGLFPRRWS 120 AIATHLPGRT DNEIKNFWNT HLKKRLIQMG FDPMTHRPRT DFFAALPQLI ALATLRDQLA 180 AAAAGGGGGV VDPSVAAQLQ GGGAGGGADV AIQAAKMQYL QCLLQSAATT IATAGSGVGG 240 GGGMLAPAMM ITSGGDVEAN LRLIGCGAGA GDAYACHGHG GALPPLADLS DVTTANPVAD 300 WCSATASSSC GGGGGGASSP FPWPEFCFPD DPFITDFL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	5e-25	12	146	5	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269\|PubMed:24902892}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR08G15530.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269\|PubMed:24902892}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004376	1e-126	AP004376.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0481F05.
GenBank	AP014964	1e-126	AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025883226.1	1e-144	transcription factor MYB93
Swissprot	Q9S9Z2	2e-90	MYB93_ARATH; Transcription factor MYB93
TrEMBL	A0A0D9X945	0.0	A0A0D9X945_9ORYZ; Uncharacterized protein
STRING	LPERR08G15530.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1126	37	132

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	1e-87	myb domain protein 93

Publications ? help Back to Top
Gibbs DJ,Coates JC AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis. Plant Signal Behav, 2014. 9(10): p. e970406 [PMID:25482809]