PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR08G15410.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

Trihelix

Protein Properties

Length: 353aa MW: 39112.9 Da PI: 7.563

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR08G15410.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	61.7	1.8e-19	59	143	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W + e+++L++a++e+++rlrrg+lk+++We+v++ + + ++++ +qC++k+e+l+kry+ + ++ s +pyf+++e LPERR08G15410.1 59 WAHMETMHLLDAYEERWTRLRRGQLKAQQWEDVAADVaarcaaSGAVLRKTGTQCRHKLEKLRKRYRIESARPVT------SLWPYFRRME 143 **********************************99999744455689*************99888775......68*****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	5.3E-18	57	145	No hit	No description
SMART	SM00595	1.4E-4	66	150	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MAAAALQAAA AAADSERPGR METPAADRWA RRAEGEAAAA ADEEEPQLRR RKSAPGQPWA 60 HMETMHLLDA YEERWTRLRR GQLKAQQWED VAADVAARCA ASGAVLRKTG TQCRHKLEKL 120 RKRYRIESAR PVTSLWPYFR RMERLERGPL PVSSAFPSPP PPAVSPPAAA SDEDDDDDEE 180 EEDEEEAEEP IPRNNNTRSI NGILRESGSG GGFGGFAPRP PQPPPPQQQP SSIAMLSTAP 240 PRKRVAYEAF QAKAAMADKM KKEEEPPPAS IRPCGGANAE ISAILREFGQ GIMRLERRRM 300 EMQWEIDRGW KETEARHSRM LLDAQRRLVE SLNAVPPPAK KARREHGGSG DGS

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MAAAALQAAA AAADSERPGR METPAADRWA RRAEGEAAAA ADEEEPQLRR RKSAPGQPWA  60
HMETMHLLDA YEERWTRLRR GQLKAQQWED VAADVAARCA ASGAVLRKTG TQCRHKLEKL  120
RKRYRIESAR PVTSLWPYFR RMERLERGPL PVSSAFPSPP PPAVSPPAAA SDEDDDDDEE  180
EEDEEEAEEP IPRNNNTRSI NGILRESGSG GGFGGFAPRP PQPPPPQQQP SSIAMLSTAP  240
PRKRVAYEAF QAKAAMADKM KKEEEPPPAS IRPCGGANAE ISAILREFGQ GIMRLERRRM  300
EMQWEIDRGW KETEARHSRM LLDAQRRLVE SLNAVPPPAK KARREHGGSG DGS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR08G15410.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015648379.1	1e-122	trihelix transcription factor ASIL2
TrEMBL	A0A0D9X929	0.0	A0A0D9X929_9ORYZ; Uncharacterized protein
STRING	LPERR08G15410.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10078	29	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	1e-17	Trihelix family protein