PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G14560.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family GeBP
Protein Properties Length: 472aa    MW: 50922.1 Da    PI: 9.9816
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G14560.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57394.98.5e-30206303397
           DUF573   3 fqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifelsk 93 
                        r+w+ eDe+++L++li+++ak+g+   +s+++ ++++++++++ +k+s++ql++KirrLK+Kf+   ++ +ksg+ep+f + hd+++++lsk
  LPERR08G14560.1 206 QPRVWNPEDEVTILRALITYRAKNGVlpGSSQETAKLHNMIRGQLTVKASTTQLSDKIRRLKHKFNLILARvTKSGREPNFPTVHDREVYDLSK 299
                      579***********************888899************************************999899******************** PP

           DUF573  94 kiWg 97 
                      k+W+
  LPERR08G14560.1 300 KVWN 303
                      ***8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.0E-26207303IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MAPKRPDAAS GSASEASDGE APRRRSRSRS RSPSRSVSLS PSRSRSKTPP SNLHPNPAAL  60
STPASAAVDF AAVSDSDADA AAADADADAD ARLASPRRSR ERSPRLHSDS DNSAAAEVEE  120
ADAEAVAVAA ASDDGDDEGN ATPPPRSRRS SRVEPSSIKP ISSRPMDASR RPATPAAAGG  180
SSQSQRRSKR PRASPAQHSP EYQKRQPRVW NPEDEVTILR ALITYRAKNG VLPGSSQETA  240
KLHNMIRGQL TVKASTTQLS DKIRRLKHKF NLILARVTKS GREPNFPTVH DREVYDLSKK  300
VWNSKTGGVI SAGAGSAGGG GGGRVYENVE EVAESDEEQG SAESDDDMES GWDDRDHRNK  360
RLKAIVANGN GNAIVTGGRS VHGNGSWKGD AAEKGKDMYP YLWEAVEELS KEHPSGTTFR  420
KAFGMLDGSR ARAMEEKLNR FRLSEIRQQV RRMDLMKETI KMVLDALEGT IE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12230RRRSRSRSR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G14560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015695633.10.0PREDICTED: mediator-associated protein 1-like, partial
TrEMBLA0A0D9X8R30.0A0A0D9X8R3_9ORYZ; Uncharacterized protein
STRINGLPERR08G14560.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26713587
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.12e-13DNA-binding storekeeper protein-related transcriptional regulator