PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR08G13170.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

NAC

Protein Properties

Length: 381aa MW: 42748.4 Da PI: 8.2696

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR08G13170.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.8	1.7e-52	16	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 l pGfrFhPtdeelv++yLk+k+++k++++ e i+++diyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t++g+Wkatg+d++++s LPERR08G13170.1 16 LLPGFRFHPTDEELVSFYLKRKIQQKPISI-ELIRQLDIYKFDPWDLPKLASTGEKEWYFYCPRDRKYRNSVRPNRVTAAGFWKATGTDRPIYS 108 579*************************.89***********9888999*********************************** PP NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + +++ +glkk+Lvfykgra +g ktdW+mhe+rl LPERR08G13170.1 109 TeGTKCIGLKKSLVFYKGRAARGIKTDWMMHEFRL 143 956667*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.89E-58	13	174	IPR003441	NAC domain
PROSITE profile	PS51005	56.866	16	174	IPR003441	NAC domain
Pfam	PF02365	7.9E-26	18	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence Send to blast
MEERNDINMD KSDEVLLPGF RFHPTDEELV SFYLKRKIQQ KPISIELIRQ LDIYKFDPWD 60 LPKLASTGEK EWYFYCPRDR KYRNSVRPNR VTAAGFWKAT GTDRPIYSTE GTKCIGLKKS 120 LVFYKGRAAR GIKTDWMMHE FRLPTLTDPS LPKKLIEKNI PLNDSWTICR IFKKTSSMAQ 180 RALCQAWGPH LPGAIDPDIF STLQSVQASQ LALESSSCSL QAAAPAAQIT SKYALQGNQQ 240 QQQHKPSNPQ DGSSCKVINF NCSQPADVQI GQIILPFETQ TSQKTAGAAP LLFDAQFGQP 300 DQIGRFVVDS SVNVNGGSIS NKNQDSAARK PGNGFSMNSE WEGVGRINFP FDLGADSLDD 360 WRSNIPWESF LSPTVHAEIP H

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence Send to blast

MEERNDINMD KSDEVLLPGF RFHPTDEELV SFYLKRKIQQ KPISIELIRQ LDIYKFDPWD  60
LPKLASTGEK EWYFYCPRDR KYRNSVRPNR VTAAGFWKAT GTDRPIYSTE GTKCIGLKKS  120
LVFYKGRAAR GIKTDWMMHE FRLPTLTDPS LPKKLIEKNI PLNDSWTICR IFKKTSSMAQ  180
RALCQAWGPH LPGAIDPDIF STLQSVQASQ LALESSSCSL QAAAPAAQIT SKYALQGNQQ  240
QQQHKPSNPQ DGSSCKVINF NCSQPADVQI GQIILPFETQ TSQKTAGAAP LLFDAQFGQP  300
DQIGRFVVDS SVNVNGGSIS NKNQDSAARK PGNGFSMNSE WEGVGRINFP FDLGADSLDD  360
WRSNIPWESF LSPTVHAEIP H

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-54	16	177	17	168	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-54	16	177	17	168	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-54	16	177	17	168	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-54	16	177	17	168	NO APICAL MERISTEM PROTEIN
3swm_A	1e-53	16	177	20	171	NAC domain-containing protein 19
3swm_B	1e-53	16	177	20	171	NAC domain-containing protein 19
3swm_C	1e-53	16	177	20	171	NAC domain-containing protein 19
3swm_D	1e-53	16	177	20	171	NAC domain-containing protein 19
3swp_A	1e-53	16	177	20	171	NAC domain-containing protein 19
3swp_B	1e-53	16	177	20	171	NAC domain-containing protein 19
3swp_C	1e-53	16	177	20	171	NAC domain-containing protein 19
3swp_D	1e-53	16	177	20	171	NAC domain-containing protein 19
4dul_A	9e-54	16	177	17	168	NAC domain-containing protein 19
4dul_B	9e-54	16	177	17	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR08G13170.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK073013	0.0	AK073013.1 Oryza sativa Japonica Group cDNA clone:J033000B16, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006659439.1	0.0	PREDICTED: protein FEZ-like
Swissprot	Q9ZVH0	4e-97	FEZ_ARATH; Protein FEZ
TrEMBL	A0A0D9X882	0.0	A0A0D9X882_9ORYZ; Uncharacterized protein
STRING	LPERR08G13170.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3366	38	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	5e-99	NAC family protein

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]