PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR08G13030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | G2-like | ||||||||
Protein Properties | Length: 283aa MW: 31028.8 Da PI: 5.1188 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 95.6 | 3.8e-30 | 16 | 69 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +rlrWt +LHerFv av++LGG+++AtPk+++ +m v+gLtl+h+kSHLQkYR LPERR08G13030.1 16 TRLRWTGQLHERFVLAVAELGGADRATPKSVMTAMAVPGLTLYHLKSHLQKYRQ 69 7****************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-29 | 13 | 73 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.31E-14 | 15 | 71 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.6E-21 | 16 | 69 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.1E-5 | 17 | 68 | IPR001005 | SANT/Myb domain |
PROSITE pattern | PS00018 | 0 | 91 | 103 | IPR018247 | EF-Hand 1, calcium-binding site |
Pfam | PF14379 | 5.1E-15 | 123 | 163 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MSSQQQQQQH AGEARTRLRW TGQLHERFVL AVAELGGADR ATPKSVMTAM AVPGLTLYHL 60 KSHLQKYRQA VSRGGGGSND RSSSSERQPA DYNDDGDVTA DELHAIAYDD DGGDADSSSR 120 SMVQMQKEVQ RKLQEQIEVQ KHLQLRMEAQ GRYLQSVLRR AQEVLADHSL AASSPESAKA 180 ELSDLASAVE LECMSSSSPP PPRRHRHSAA DSCVTTSSSE AESKVAGAGS KRLYTSDCTV 240 EQPVQGKRAF NFLQSHHKEE DEDEEEEYAG AEDGSSSEID LNR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-17 | 14 | 73 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-17 | 14 | 73 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 2e-17 | 15 | 70 | 1 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-17 | 15 | 70 | 1 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-17 | 15 | 70 | 1 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-17 | 15 | 70 | 1 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-17 | 14 | 73 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-17 | 14 | 73 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-17 | 14 | 73 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-17 | 14 | 73 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-17 | 14 | 73 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-17 | 14 | 73 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR08G13030.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015650853.1 | 1e-130 | myb-related protein 2 | ||||
TrEMBL | A0A0D9X865 | 0.0 | A0A0D9X865_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR08G13030.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11264 | 30 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18240.4 | 7e-48 | myb-related protein 1 |