PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G13030.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family G2-like
Protein Properties Length: 283aa    MW: 31028.8 Da    PI: 5.1188
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G13030.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like95.63.8e-301669255
          G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                     +rlrWt +LHerFv av++LGG+++AtPk+++ +m v+gLtl+h+kSHLQkYR 
  LPERR08G13030.1 16 TRLRWTGQLHERFVLAVAELGGADRATPKSVMTAMAVPGLTLYHLKSHLQKYRQ 69
                     7****************************************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-291373IPR009057Homeodomain-like
SuperFamilySSF466891.31E-141571IPR009057Homeodomain-like
TIGRFAMsTIGR015578.6E-211669IPR006447Myb domain, plants
PfamPF002492.1E-51768IPR001005SANT/Myb domain
PROSITE patternPS00018091103IPR018247EF-Hand 1, calcium-binding site
PfamPF143795.1E-15123163IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MSSQQQQQQH AGEARTRLRW TGQLHERFVL AVAELGGADR ATPKSVMTAM AVPGLTLYHL  60
KSHLQKYRQA VSRGGGGSND RSSSSERQPA DYNDDGDVTA DELHAIAYDD DGGDADSSSR  120
SMVQMQKEVQ RKLQEQIEVQ KHLQLRMEAQ GRYLQSVLRR AQEVLADHSL AASSPESAKA  180
ELSDLASAVE LECMSSSSPP PPRRHRHSAA DSCVTTSSSE AESKVAGAGS KRLYTSDCTV  240
EQPVQGKRAF NFLQSHHKEE DEDEEEEYAG AEDGSSSEID LNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-171473160Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-171473160Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-171570156Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-171570156Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-171570156Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-171570156Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-171473160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-171473160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-171473160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-171473160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-171473160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-171473160Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G13030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650853.11e-130myb-related protein 2
TrEMBLA0A0D9X8650.0A0A0D9X865_9ORYZ; Uncharacterized protein
STRINGLPERR08G13030.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112643038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18240.47e-48myb-related protein 1