PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR08G13020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | MYB | ||||||||
Protein Properties | Length: 336aa MW: 35261.3 Da PI: 8.0343 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.8 | 3.9e-16 | 42 | 87 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l ++v+++G+ +W++Ia+++ gR++k+c++rw++ LPERR08G13020.1 42 RGHWRPAEDAKLRELVALYGPQNWNLIAEKLD-GRSGKSCRLRWFNQ 87 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 52.2 | 1.4e-16 | 95 | 137 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++++eE+e+l a++ +G++ W+ Iar ++ gRt++ +k++w+ LPERR08G13020.1 95 RPFSEEEEERLMAAHRYYGNK-WAMIARLFP-GRTDNAVKNHWHV 137 68*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.773 | 36 | 88 | IPR017930 | Myb domain |
SMART | SM00717 | 6.1E-14 | 41 | 90 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.22E-28 | 42 | 135 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.5E-26 | 43 | 95 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.37E-13 | 45 | 86 | No hit | No description |
Pfam | PF13921 | 7.0E-16 | 45 | 105 | No hit | No description |
PROSITE profile | PS51294 | 25.516 | 89 | 143 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-12 | 93 | 141 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-20 | 96 | 142 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.39E-10 | 96 | 136 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MDTGIDGGCG GAGYNYNNGG NGGEHQQESS SSGQTSPRLA ARGHWRPAED AKLRELVALY 60 GPQNWNLIAE KLDGRSGKSC RLRWFNQLDP RISKRPFSEE EEERLMAAHR YYGNKWAMIA 120 RLFPGRTDNA VKNHWHVIMA RKYREQSTAY RRRKLNQAVQ RKLDSSSSST VALAAGDGHL 180 VAGDPYAAAA AAAFSFRHYC GFPFPAIAAG DEAHFGCLFP GPAAAGRGVA GGMTWPDAMA 240 AGGGGGGLID GGGGRYVVAE PPPFLFPAAA AHGGAAGWLN HGHEMMMVNG GDVIVSGAGV 300 PYVDGIGRDQ NGGGGGSHFE AAASPAFIDF LGVGAT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-34 | 42 | 142 | 7 | 107 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00222 | DAP | Transfer from AT1G69560 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR08G13020.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012616 | 4e-98 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025883218.1 | 1e-124 | transcription factor CSA-like isoform X1 | ||||
TrEMBL | A0A0D9X864 | 0.0 | A0A0D9X864_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR08G13020.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP294 | 38 | 260 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 2e-73 | myb domain protein 105 |