PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR08G12970.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

NAC

Protein Properties

Length: 280aa MW: 30913.2 Da PI: 4.7665

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR08G12970.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	134.5	7.3e-42	14	142	1	121
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.........kvka..eekewyfFskrdkkyatgkrknratksgyW 83 lp+GfrF Ptdeelv++yL++k+ + +++ +i++vd+y+++Pw+Lp + + +e+yfF++r++ky++g r++r+t+ gyW LPERR08G12970.1 14 LPAGFRFFPTDEELVTYYLARKAMDATFTS-AAIRDVDLYSSDPWHLPCdwsaastggE--DggGGDECYFFCTRSSKYPSGGRARRSTAGGYW 104 799**********************999.78***********54666544332..0335669********************** PP NAM 84 katgkdkevlskkgelvglkktLvfykgrapkgektdW 121 k+tgkdk+v+ +g ++g+kktLvfy grap+gekt+W LPERR08G12970.1 105 KSTGKDKAVYGGGGVVIGTKKTLVFYGGRAPRGEKTRW 142 *******9************************ PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.27E-46	10	153	IPR003441	NAC domain
PROSITE profile	PS51005	41.022	14	168	IPR003441	NAC domain
Pfam	PF02365	8.4E-21	15	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MEEEKEKQQR LSSLPAGFRF FPTDEELVTY YLARKAMDAT FTSAAIRDVD LYSSDPWHLP 60 CDWSAASTGG EDGGGGDECY FFCTRSSKYP SGGRARRSTA GGYWKSTGKD KAVYGGGGVV 120 IGTKKTLVFY GGRAPRGEKT RWSEWVICRV FMKKPPSDNY TMLEMEQEEE TTTAPLEHTQ 180 NQSHLLPPPP PAKSSSPPWQ TSSRSGEEDG DGMARRREES PVVSSRCASP SYWPLNIGSS 240 STDDLPELTD FGEIYSGMIT GGGTNSVCSL FPDEPYCWNF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-34	13	154	16	166	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-34	13	154	16	166	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-34	13	154	16	166	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-34	13	154	16	166	NO APICAL MERISTEM PROTEIN
3swm_A	7e-34	13	154	19	169	NAC domain-containing protein 19
3swm_B	7e-34	13	154	19	169	NAC domain-containing protein 19
3swm_C	7e-34	13	154	19	169	NAC domain-containing protein 19
3swm_D	7e-34	13	154	19	169	NAC domain-containing protein 19
3swp_A	7e-34	13	154	19	169	NAC domain-containing protein 19
3swp_B	7e-34	13	154	19	169	NAC domain-containing protein 19
3swp_C	7e-34	13	154	19	169	NAC domain-containing protein 19
3swp_D	7e-34	13	154	19	169	NAC domain-containing protein 19
4dul_A	8e-34	13	154	16	166	NAC domain-containing protein 19
4dul_B	8e-34	13	154	16	166	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR08G12970.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004666	7e-50	AP004666.4 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0431A03.
GenBank	AP014964	7e-50	AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBank	CP012616	7e-50	CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015650320.1	2e-83	NAC domain-containing protein 87 isoform X1
Swissprot	Q9FLJ2	1e-45	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A0D9X859	0.0	A0A0D9X859_9ORYZ; Uncharacterized protein
STRING	LPERR08G12970.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14765	21	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	2e-35	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]