PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR08G12880.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | TCP | ||||||||
Protein Properties | Length: 225aa MW: 24548.9 Da PI: 4.8866 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 110.3 | 2.8e-34 | 61 | 167 | 3 | 111 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssgkaaksa 94 ++drhski T++g RdRR+Rls+ +a+ fF+Lqd+LGfdk+skt+eWLl q+ +ai+ l ++ ++a + + +a++++++ a++s+ LPERR08G12880.1 61 LRTDRHSKIRTAQGVRDRRMRLSVGVARDFFALQDKLGFDKASKTVEWLLAQSRKAIDSLSLSDYDHAAVAvaS----PPEAKEKGEAPASSSS 150 689************************************************************77777222221....1111111222222222 PP TCP 95 akskksqksaasalnla 111 +++ ++++++a+a+ LPERR08G12880.1 151 TTNASTKDDDAAARGAE 167 22222222222233333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 32.375 | 62 | 120 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 8.7E-33 | 62 | 156 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MPSSSSSPSL DDYDATRFFF HHHQQHQAET LEAVVNTAAA PAAAAEVGPA SASAAGRRRP 60 LRTDRHSKIR TAQGVRDRRM RLSVGVARDF FALQDKLGFD KASKTVEWLL AQSRKAIDSL 120 SLSDYDHAAV AVASPPEAKE KGEAPASSSS TTNASTKDDD AAARGAEKAT SPPAVELDWP 180 LSPAAAEQPV DGWEYYYQYY NHLEEIMSCE PSTTDEFICS EEEWK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 4e-13 | 67 | 120 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 4e-13 | 67 | 120 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00215 | DAP | Transfer from AT1G67260 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR08G12880.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM578672 | 4e-51 | KM578672.1 Arthraxon prionodes isolate TK103-vimineum6 retarded palea 1 protein (rep1) gene, partial cds. | |||
GenBank | KM578673 | 4e-51 | KM578673.1 Arthraxon prionodes isolate TK103-vimineum8 retarded palea 1 protein (rep1) gene, partial cds. | |||
GenBank | KM578674 | 4e-51 | KM578674.1 Arthraxon prionodes isolate TK103-vimineum5 retarded palea 1 protein (rep1) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025883271.1 | 2e-52 | transcription factor TB1 | ||||
TrEMBL | A0A0D9X849 | 1e-163 | A0A0D9X849_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR08G12880.1 | 1e-164 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4052 | 31 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67260.2 | 6e-25 | TCP family protein |