PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR08G12860.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 244aa MW: 27705.4 Da PI: 8.6255 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.7 | 6.4e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRr g++KKA+ELS+LCdaev +++fsstg+ly+++s LPERR08G12860.2 9 KRIENATSRQVTFSKRRSGLFKKAKELSILCDAEVGLVVFSSTGRLYDFAS 59 79***********************************************86 PP | |||||||
2 | K-box | 73.4 | 6.5e-25 | 74 | 166 | 6 | 98 |
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++ +a+s +e+a L+++++nLq+ +R+llG++ + L++++Lq+Le++Le sl++iR kK++++l+qi+el k +++en++Lrkk+ LPERR08G12860.2 74 EDPHHTMNASSEAKEAASLRQQLHNLQEYHRQLLGQQFSGLDVEDLQNLESKLEMSLRNIRLKKDNVMLDQIQELSSKGSLIHQENMELRKKV 166 334778889999*******************************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.5E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.137 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.78E-45 | 2 | 75 | No hit | No description |
SuperFamily | SSF55455 | 4.06E-33 | 2 | 80 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.7E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 13.865 | 82 | 172 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 3.7E-23 | 84 | 166 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MGRGKIEIKR IENATSRQVT FSKRRSGLFK KAKELSILCD AEVGLVVFSS TGRLYDFAST 60 SMKSIIERYN ETTEDPHHTM NASSEAKEAA SLRQQLHNLQ EYHRQLLGQQ FSGLDVEDLQ 120 NLESKLEMSL RNIRLKKDNV MLDQIQELSS KGSLIHQENM ELRKKVSLVH EENINLQKKV 180 YGPQGINEHS TGSPTQHSFL TRENEIGPNL ELSLPENVEK DGLGIAKAVR RCRCKASTQP 240 CREN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 7e-23 | 1 | 79 | 1 | 78 | MEF2C |
5f28_B | 7e-23 | 1 | 79 | 1 | 78 | MEF2C |
5f28_C | 7e-23 | 1 | 79 | 1 | 78 | MEF2C |
5f28_D | 7e-23 | 1 | 79 | 1 | 78 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR08G12860.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY345220 | 1e-167 | AY345220.1 Oryza sativa (japonica cultivar-group) transcription factor MADS23 mRNA, complete cds; alternatively spliced. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025883353.1 | 1e-136 | MADS-box transcription factor 23 isoform X2 | ||||
Swissprot | Q6VAM4 | 8e-97 | MAD23_ORYSJ; MADS-box transcription factor 23 | ||||
TrEMBL | A0A0D9X845 | 1e-179 | A0A0D9X845_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0D9X846 | 1e-179 | A0A0D9X846_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR08G12860.1 | 1e-179 | (Leersia perrieri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57230.1 | 3e-80 | AGAMOUS-like 16 |
Publications ? help Back to Top | |||
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