PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G12860.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MIKC_MADS
Protein Properties Length: 309aa    MW: 35393.1 Da    PI: 8.1375
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G12860.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.29.3e-2874124151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                      krien + rqvtfskRr g++KKA+ELS+LCdaev +++fsstg+ly+++s
  LPERR08G12860.1  74 KRIENATSRQVTFSKRRSGLFKKAKELSILCDAEVGLVVFSSTGRLYDFAS 124
                      79***********************************************86 PP
2K-box72.71.1e-24139231698
            K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                          ++ +a+s  +e+a L+++++nLq+ +R+llG++ + L++++Lq+Le++Le sl++iR kK++++l+qi+el  k   +++en++Lrkk+
  LPERR08G12860.1 139 EDPHHTMNASSEAKEAASLRQQLHNLQEYHRQLLGQQFSGLDVEDLQNLESKLEMSLRNIRLKKDNVMLDQIQELSSKGSLIHQENMELRKKV 231
                      3347788899999******************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-4166125IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.13766126IPR002100Transcription factor, MADS-box
CDDcd002652.54E-4467140No hitNo description
SuperFamilySSF554556.54E-3367145IPR002100Transcription factor, MADS-box
PROSITE patternPS00350068122IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-296888IPR002100Transcription factor, MADS-box
PfamPF003193.9E-2675122IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-2988103IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-29103124IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.865147237IPR002487Transcription factor, K-box
PfamPF014866.5E-23149231IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MGSKANVDKE NIMNPDFVEL PEVDRQEFES QVEDLRRKIL SCYRKTRQCV TKQEEFTLPI  60
NDKSKMGRGK IEIKRIENAT SRQVTFSKRR SGLFKKAKEL SILCDAEVGL VVFSSTGRLY  120
DFASTSMKSI IERYNETTED PHHTMNASSE AKEAASLRQQ LHNLQEYHRQ LLGQQFSGLD  180
VEDLQNLESK LEMSLRNIRL KKDNVMLDQI QELSSKGSLI HQENMELRKK VSLVHEENIN  240
LQKKVYGPQG INEHSTGSPT QHSFLTRENE IGPNLELSLP ENVEKDGLGI AKAVRRCRCK  300
ASTQPCREN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-2266144178MEF2C
5f28_B4e-2266144178MEF2C
5f28_C4e-2266144178MEF2C
5f28_D4e-2266144178MEF2C
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G12860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3452201e-168AY345220.1 Oryza sativa (japonica cultivar-group) transcription factor MADS23 mRNA, complete cds; alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025883353.11e-135MADS-box transcription factor 23 isoform X2
TrEMBLA0A0D9X8450.0A0A0D9X845_9ORYZ; Uncharacterized protein
STRINGLPERR08G12860.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61435130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.12e-79AGAMOUS-like 16