PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR08G12560.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | G2-like | ||||||||
Protein Properties | Length: 406aa MW: 41634.6 Da PI: 9.9929 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.8 | 4.3e-32 | 245 | 298 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ LPERR08G12560.2 245 PRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 298 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.15E-15 | 242 | 299 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.0E-28 | 243 | 299 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.3E-24 | 245 | 298 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.8E-7 | 246 | 297 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009887 | Biological Process | organ morphogenesis | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0009956 | Biological Process | radial pattern formation | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 406 aa Download sequence Send to blast |
MASSATSSAP PPDLSLHISL PSAGGAGAGA GAAVVESSTA APPAIGRGVK TAVAAVGIDP 60 WRRLDGSTAS TELSLSMSTP PPQQQQDVLP WRLRQQPSTT APTPASVPVT LPTLPMDGTA 120 STRPIRGVPI YGGGGHPFLA GGGGAKAMGL YNNPYHSTAW PSSTSPAPLP PDVVNTTSSA 180 SLLSPSAYHR MLSSTGRLHG VLADTLRGYG AGAAAAMGGG YGGVASSGRF MPRLLPASRR 240 SMRAPRMRWT SSLHARFVHA VELLGGHERA TPKSVLELMD VKDLTLAHVK SHLQMYRTVK 300 STDKPAAASG PMDGSGSGDD ELPATGGRQA TSSGAEVDRR FSFTEHRSSS EGAVSHAGGG 360 GDGDCSSSAI NSDTIRARSN SPRDLWLSSS SVCNMDTQRL VTVERV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 2e-16 | 246 | 300 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-16 | 246 | 300 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-16 | 246 | 300 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-16 | 246 | 300 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that regulates abaxial identity during leaf development. {ECO:0000269|PubMed:18594992}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR08G12560.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK287788 | 1e-155 | AK287788.1 Oryza sativa Japonica Group cDNA, clone: J065172N06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015648273.1 | 1e-137 | probable transcription factor RL9 | ||||
Swissprot | Q0J235 | 2e-79 | ROLL9_ORYSJ; Probable transcription factor RL9 | ||||
TrEMBL | A0A0D9X805 | 0.0 | A0A0D9X805_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR08G12560.1 | 0.0 | (Leersia perrieri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32240.1 | 3e-30 | G2-like family protein |