PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G11550.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family LBD
Protein Properties Length: 434aa    MW: 47077.2 Da    PI: 4.6084
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G11550.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.42.8e-3966164199
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      aCaaCk++rrkC++dC +apyfpa+q+++f n+h+lFG+sn+lk+l++l++e  +dam++l+y+Ae+ra+dPv G+++vi +l++qle + ael
  LPERR08G11550.1  66 ACAACKYQRRKCNPDCRMAPYFPADQQRRFLNAHRLFGVSNILKTLRHLKPELCDDAMRTLIYQAEMRAHDPVLGCCRVIVDLERQLEIETAEL 159
                      7********************************************************************************************* PP

           DUF260  95 allke 99 
                      +++ +
  LPERR08G11550.1 160 NAVLH 164
                      98866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.81965166IPR004883Lateral organ boundaries, LOB
PfamPF031957.9E-3766162IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MTSTTTINNP ITTATPPPHH QRQQQQTHLP AAVAAARPPH STGSGSSGSH RGGGGGGSGS  60
GSTNQACAAC KYQRRKCNPD CRMAPYFPAD QQRRFLNAHR LFGVSNILKT LRHLKPELCD  120
DAMRTLIYQA EMRAHDPVLG CCRVIVDLER QLEIETAELN AVLHHLALCR QAAAAAGGGG  180
ASASVVAAAL PPGILDDPCA DLDVTSSNQP LLISAEQEVV DALYANQDAD AAILQGDNHQ  240
NQEQSQHEQH HGQQQLYDYF YYDSTVGDDV SSKPNLDINV DNMQHFDFDT SYDAENKVKL  300
TSDHIPVGVD EHSQIDSKEF ETKATPSLVD VFDMRHEQVD VNTDIVEVKE MVDMNADIEI  360
KTMVDMNVNI VDVVKTMVDV NADIDDVKTV VDVNGDIGVK EELPEEENGK AVAGKAPQMA  420
DSSHCKLGLG FSSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-276718812131LOB family transfactor Ramosa2.1
5ly0_B6e-276718812131LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G11550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0053881e-104AP005388.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0086F04.
GenBankAP0149641e-104AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126161e-104CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025883262.10.0uncharacterized protein LOC9266602
TrEMBLA0A0D9X7N50.0A0A0D9X7N5_9ORYZ; Uncharacterized protein
STRINGLPERR08G11550.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52283461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.12e-36LOB domain-containing protein 22