PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G11070.3
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 564aa    MW: 62562.8 Da    PI: 4.7991
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G11070.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH438e-14388435355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      ++h + ErrRR+++N+ f  L++l+P+        K++Ka+iL +++ YIk+L+
  LPERR08G11070.3 388 KNHVMSERRRREKLNEMFLILKSLIPSiH------KMDKASILAETITYIKELE 435
                      5899***********************66......****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.2E-4820197IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.672385434IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-18388452IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.32E-16388439No hitNo description
Gene3DG3DSA:4.10.280.104.0E-18389455IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-11389435IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-16391440IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MASAPPVQEE PLQPGTKPFR SQLAAAVRSI NWSYAIFWSI STSRPGVLTW KDGFYNGEVK  60
TRKLSNSAGL TADEIILQRS EQLRELYSSL LSGECDHRAR RPVAALWPED LGNTEWYYVI  120
CMTYVFWPGQ GLPGRSFASN GSVWLCNAQS ADSKTFARAL LAKTIVCVPF MSGVLELGTT  180
DLVMEEPNLV DRITASFGEP QFSACLEVPN SSPSLNETGD ADDIVLEDLI DNAIEEEQMI  240
QPGEHELSDA VVVADHQRMS NANDGLDQIT MEIDELYSLC EELDLDTTFS LEHDNSYWPM  300
NTGSFQLVRM SSPEAMAATA AEAASDFDGV VSITSCFMTW KRANLDEVTV SHTGIESQKL  360
LRKTLDGGAW RSNNGRGSVA MTQESSIKNH VMSERRRREK LNEMFLILKS LIPSIHKMDK  420
ASILAETITY IKELEKRVKE LESNSERSHQ RSTKLRGNNN INGKEIPNVG DGVGGGDASR  480
NHDWVLSEKV PSNVNVIVIH KCKWKELMIT RVFDTIKSLC LDILSVQAST PVGLFRLKIQ  540
AKFACSDEVA PERIIEALQN AIGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A5e-1851972192Transcription factor MYC3
4rqw_B5e-1851972192Transcription factor MYC3
4rs9_A5e-1851972192Transcription factor MYC3
4yz6_A5e-1851972192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1393398ERRRRE
2394399RRRREK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G11070.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006653663.10.0PREDICTED: anthocyanin regulatory R-S protein-like
RefseqXP_015635094.10.0anthocyanin regulatory R-S protein
RefseqXP_015692285.10.0PREDICTED: anthocyanin regulatory R-S protein-like
SwissprotP135261e-164ARLC_MAIZE; Anthocyanin regulatory Lc protein
TrEMBLA0A0D9X7H80.0A0A0D9X7H8_9ORYZ; Uncharacterized protein
STRINGLPERR08G11070.10.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.18e-74bHLH family protein
Publications ? help Back to Top
  1. Pattanaik S,Xie CH,Yuan L
    The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength.
    Planta, 2008. 227(3): p. 707-15
    [PMID:18075757]
  2. Huang ZA, et al.
    The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.).
    J Genet Genomics, 2012. 39(3): p. 149-56
    [PMID:22464474]
  3. Ludwig SR,Habera LF,Dellaporta SL,Wessler SR
    Lc, a member of the maize R gene family responsible for tissue-specific anthocyanin production, encodes a protein similar to transcriptional activators and contains the myc-homology region.
    Proc. Natl. Acad. Sci. U.S.A., 1989. 86(18): p. 7092-6
    [PMID:2674946]
  4. Li P, et al.
    Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize.
    PLoS ONE, 2018. 13(1): p. e0190670
    [PMID:29304111]