PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR08G09750.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | G2-like | ||||||||
Protein Properties | Length: 316aa MW: 34689.7 Da PI: 6.575 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 105.3 | 3.4e-33 | 45 | 99 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++rlrWt+eLH+rFveav+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl LPERR08G09750.1 45 RQRLRWTNELHDRFVEAVSQLGGPDRATPKGVLRIMGVPGLTIYHVKSHLQKYRL 99 58****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.037 | 42 | 102 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.87E-18 | 44 | 99 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.0E-32 | 44 | 100 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.3E-26 | 46 | 100 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.6E-9 | 47 | 98 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.6E-23 | 140 | 186 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MFQPNPISSS GQTHGNPTTH EQMELGSNGM VPHNGGNNNP NMAARQRLRW TNELHDRFVE 60 AVSQLGGPDR ATPKGVLRIM GVPGLTIYHV KSHLQKYRLA KYIPDPSADV HLVQFPCVDN 120 KAEDKDPDNL LAALEGSSGM QISEALKLQM EVQKRLHEQL EVQRQLQLRI EAQGKYLQKI 180 IEEQQRVIGA GSSRATSSEQ LPDSERSNPP TPVPTSESPV QGALPSKTNV NHVEPTKSPS 240 HDDPLPRGEP LTPDSSCRPG SPIISPKHER AAKRQRGSDT GDDTAFADGQ FILPHDIFES 300 STGSEFQQCS MPYSGH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 8e-24 | 44 | 102 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 8e-24 | 44 | 102 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 7e-24 | 45 | 102 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 7e-24 | 45 | 102 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 7e-24 | 45 | 102 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 7e-24 | 45 | 102 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 8e-24 | 44 | 102 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 8e-24 | 44 | 102 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 8e-24 | 44 | 102 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 8e-24 | 44 | 102 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 8e-24 | 44 | 102 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 8e-24 | 44 | 102 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR08G09750.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004396 | 1e-165 | AP004396.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0404D10. | |||
GenBank | AP004459 | 1e-165 | AP004459.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0410E11. | |||
GenBank | AP014964 | 1e-165 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015648505.1 | 0.0 | myb family transcription factor PHL7 | ||||
Swissprot | Q9SJW0 | 5e-87 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | A0A0D9X6Z7 | 0.0 | A0A0D9X6Z7_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR08G09750.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2220 | 38 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 5e-65 | G2-like family protein |