PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G09750.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family G2-like
Protein Properties Length: 316aa    MW: 34689.7 Da    PI: 6.575
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G09750.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like105.33.4e-334599155
          G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                     ++rlrWt+eLH+rFveav+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
  LPERR08G09750.1 45 RQRLRWTNELHDRFVEAVSQLGGPDRATPKGVLRIMGVPGLTIYHVKSHLQKYRL 99
                     58****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.03742102IPR017930Myb domain
SuperFamilySSF466892.87E-184499IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.0E-3244100IPR009057Homeodomain-like
TIGRFAMsTIGR015575.3E-2646100IPR006447Myb domain, plants
PfamPF002493.6E-94798IPR001005SANT/Myb domain
PfamPF143791.6E-23140186IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MFQPNPISSS GQTHGNPTTH EQMELGSNGM VPHNGGNNNP NMAARQRLRW TNELHDRFVE  60
AVSQLGGPDR ATPKGVLRIM GVPGLTIYHV KSHLQKYRLA KYIPDPSADV HLVQFPCVDN  120
KAEDKDPDNL LAALEGSSGM QISEALKLQM EVQKRLHEQL EVQRQLQLRI EAQGKYLQKI  180
IEEQQRVIGA GSSRATSSEQ LPDSERSNPP TPVPTSESPV QGALPSKTNV NHVEPTKSPS  240
HDDPLPRGEP LTPDSSCRPG SPIISPKHER AAKRQRGSDT GDDTAFADGQ FILPHDIFES  300
STGSEFQQCS MPYSGH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A8e-2444102159Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B8e-2444102159Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A7e-2445102158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B7e-2445102158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C7e-2445102158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D7e-2445102158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A8e-2444102159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C8e-2444102159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D8e-2444102159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F8e-2444102159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H8e-2444102159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J8e-2444102159Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G09750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0043961e-165AP004396.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0404D10.
GenBankAP0044591e-165AP004459.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0410E11.
GenBankAP0149641e-165AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648505.10.0myb family transcription factor PHL7
SwissprotQ9SJW05e-87PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA0A0D9X6Z70.0A0A0D9X6Z7_9ORYZ; Uncharacterized protein
STRINGLPERR08G09750.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22203896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.15e-65G2-like family protein