PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G07770.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 609aa    MW: 66630.3 Da    PI: 6.3115
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G07770.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.73.1e-30289345259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       Dg+nWrKYGqK+vk+se++rsYYrCts++C +kkkve++  d++vvei+Y+g+Hnhe
  LPERR08G07770.1 289 GDGFNWRKYGQKQVKSSENSRSYYRCTSSNCLAKKKVEHCP-DGRVVEIIYRGTHNHE 345
                      6****************************************.***************8 PP
2WRKY100.41.1e-31456513259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dgy+WrKYGqK vkg+++prsYYrCt+ gCpv+k+ve++ +d++ +++tYeg+Hnh+
  LPERR08G07770.1 456 SDGYRWRKYGQKIVKGNPNPRSYYRCTHDGCPVRKHVEKAPDDNNNMVVTYEGKHNHD 513
                      7********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-26279347IPR003657WRKY domain
SuperFamilySSF1182906.54E-24282347IPR003657WRKY domain
PROSITE profilePS5081122.091283347IPR003657WRKY domain
SMARTSM007747.7E-33288346IPR003657WRKY domain
PfamPF031061.0E-22290345IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.7E-31449515IPR003657WRKY domain
PROSITE profilePS5081132.73450515IPR003657WRKY domain
SuperFamilySSF1182901.7E-27450515IPR003657WRKY domain
SMARTSM007742.4E-36455514IPR003657WRKY domain
PfamPF031064.7E-26457513IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MAGGDPEAPP EVERPAPETE AAAVAEVKEL PPSESSKAKA DEGEGKGKDE VEVERVKGKE  60
GAKEVEVKGM GKEKEKKKEK GKEKEKGKGK EKVEVVEKET EGKEVAANAK EVESKVKDVE  120
GKESMEVEDG KEKEEEETKA MDVDEGKESM EVDEGKTKKE KEKAKVKVEA EAKRRPAGVG  180
AETPILAVPM VAVPCFLTSP AFAGHFSMSH QAALASVTAQ AQIQLQSPTS SSYSEGLQSP  240
FSNPITPKAV MPLQQAPSGT EGSVYRPVLE KSVSFQSRSH HHVSVNMVGD GFNWRKYGQK  300
QVKSSENSRS YYRCTSSNCL AKKKVEHCPD GRVVEIIYRG THNHEPPQKT RFVKERVAHI  360
TGSSGDDETL RLVSTEIMES RSPGCKLEPG AASEASEQQL FCSSDCEGDA GNKSEDDHPS  420
TEPQPKRRII ETSSPLTPVL RTVREQKIIV QAGKTSDGYR WRKYGQKIVK GNPNPRSYYR  480
CTHDGCPVRK HVEKAPDDNN NMVVTYEGKH NHDQPFRSSS ELRDGPVPMI PAETTSEQPS  540
TMTSTDDQKQ PISKLKDGGN ESTKDKTSEV SGEKVVESAP TLLSVKTNSD DMKNTLLKDT  600
SAVVPVQNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-254575151977Probable WRKY transcription factor 4
2lex_A3e-254575151977Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G07770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2981860.0DQ298186.1 Oryza sativa (japonica cultivar-group) WRKY transcription factor 82 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015695556.10.0PREDICTED: probable WRKY transcription factor 32
TrEMBLA0A0D9X6740.0A0A0D9X674_9ORYZ; Uncharacterized protein
STRINGLPERR08G07770.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58203455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.14e-65WRKY DNA-binding protein 3