PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G06230.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 284aa    MW: 31057 Da    PI: 7.1502
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G06230.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM122.83e-38181481128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lp G  F+Ptd elv +yL +++ + +l+l ++i+++di++++Pwd+   ++++++  +fF+++++k++ ++r+nrat +g+Wk+tg++ +v+ 
  LPERR08G06230.1  18 LPIGSMFRPTDGELVFHYLYQHAIQMPLPL-NFIPSIDILRHNPWDIV-PAQEKKNGKHFFTRKENKNPGDQRRNRATGNGFWKSTGSEVTVYY 109
                      699***************************.99**************5.456677899************************************ PP

              NAM  95 k.....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      k     ++ lvg+k+tLvfy+g+++++e+t+Wvm+e+rl
  LPERR08G06230.1 110 KpngsaDDILVGMKRTLVFYRGKSSSAERTEWVMQEFRL 148
                      9876666666***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.36E-4016158IPR003441NAC domain
PROSITE profilePS5100538.24918203IPR003441NAC domain
PfamPF023651.7E-1919148IPR003441NAC domain
SuperFamilySSF1019415.36E-40191203IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MADSGVCITL VDGTTRHLPI GSMFRPTDGE LVFHYLYQHA IQMPLPLNFI PSIDILRHNP  60
WDIVPAQEKK NGKHFFTRKE NKNPGDQRRN RATGNGFWKS TGSEVTVYYK PNGSADDILV  120
GMKRTLVFYR GKSSSAERTE WVMQEFRLAG WCLSHCPVMG QVTNGGSSNA EVTIAMTNDG  180
GLSAAPTQVL PDSSWLICRI YAKRQRAPQV IIPPAFGNAQ EVMIPPAGGN AGEGRQVRFI  240
DFVGQAPRAG PSSPTCSIEL SYEGGDECTD EGDAKDSDNH GKGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-251714814140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G06230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015697669.11e-103PREDICTED: NAC transcription factor NAM-B1-like
TrEMBLA0A0D9X5M20.0A0A0D9X5M2_9ORYZ; Uncharacterized protein
STRINGLPERR08G06230.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44822369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.14e-33NAC domain containing protein 83