PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR08G05650.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | NF-YC | ||||||||
Protein Properties | Length: 326aa MW: 36268.9 Da PI: 5.7212 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 155.7 | 7.8e-49 | 154 | 256 | 1 | 100 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 ql++fw++q +e++tdf++ +lPlarikki+kadedvkmi+ eaP++++kace+fil+lt r+w h+eenkrrt++++d++aav +tdifdf LPERR08G05650.1 154 QLQAFWANQmteVEQMTDFRQPNLPLARIKKIMKADEDVKMIAGEAPAVFAKACEMFILDLTTRAWQHTEENKRRTVQRNDVTAAVMKTDIFDF 247 89*******777799******************************************************************************* PP NF-YC 92 lvdivprde 100 lvd++p d+ LPERR08G05650.1 248 LVDVMPDDH 256 ******986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.68E-30 | 146 | 248 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.8E-21 | 176 | 239 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 4.4E-34 | 177 | 253 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MAESLNALHK TRVPSAGSGL LPFSAVSSPS LSLGLPILAR CCPSRPRRRP PARRAPPSSD 60 RVIHPSLHTV VHLLEMDPPS HKANEGLIGE NPDAYAVTTY QPVLAVPGQP STIAGFSQAP 120 HGAPLYPVNP PPLSEQQQHS IQQVQQLQQQ HQQQLQAFWA NQMTEVEQMT DFRQPNLPLA 180 RIKKIMKADE DVKMIAGEAP AVFAKACEMF ILDLTTRAWQ HTEENKRRTV QRNDVTAAVM 240 KTDIFDFLVD VMPDDHKEGG MGSQDAASMH TMVAPYAPGL AFPFEVYPNQ HGLSYMWPPQ 300 EQQEQQWLPQ EKQEQQQDDS DGGQDE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 8e-45 | 162 | 253 | 3 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 226 | 232 | RRTVQRN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR08G05650.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269|PubMed:26542958}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006659211.1 | 1e-101 | PREDICTED: nuclear transcription factor Y subunit C-2-like | ||||
Swissprot | Q655V5 | 2e-52 | NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4 | ||||
TrEMBL | A0A0D9X5E5 | 0.0 | A0A0D9X5E5_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR08G05650.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16977 | 11 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 1e-52 | nuclear factor Y, subunit C2 |
Publications ? help Back to Top | |||
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