PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR08G05360.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

NAC

Protein Properties

Length: 275aa MW: 30506.7 Da PI: 9.036

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR08G05360.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	155.8	1.9e-48	11	142	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.......lelee....vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 +ppGfrFhP+d+elv +yL +k+++ + +i +vd++k+ePwdLp ewyfFs rd+kyatg+r+nrat+sgyW LPERR08G05360.1 11 MPPGFRFHPRDDELVLDYLLHKLAAGGrggggggV---YgggvAIVDVDLNKCEPWDLP--------EWYFFSLRDRKYATGQRTNRATRSGYW 93 79******************9988856666552...044435**********9........8********************** PP NAM 84 katgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrle 129 katgkd++++++ g++vg++ktLvfy+grapkg+kt+Wvmhe+rle LPERR08G05360.1 94 KATGKDRTITRRgagAGAVVGMRKTLVFYRGRAPKGRKTEWVMHEFRLE 142 *******98877888*************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.28E-54	4	160	IPR003441	NAC domain
PROSITE profile	PS51005	50.816	11	160	IPR003441	NAC domain
Pfam	PF02365	1.0E-26	12	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MSFIGMMEAR MPPGFRFHPR DDELVLDYLL HKLAAGGRGG GGGGVYGGGV AIVDVDLNKC 60 EPWDLPEWYF FSLRDRKYAT GQRTNRATRS GYWKATGKDR TITRRGAGAG AVVGMRKTLV 120 FYRGRAPKGR KTEWVMHEFR LEPQPLHLKE DWVLCRVFYK TRQTIPSPSS EEVGSLSNEL 180 DLSAAPSLPP LIDAYITFDS TPTTTSTIGS YEQVSCFSGL PALPMKGSIS FGDLLALDTS 240 EKKAIRTLHN SNTAKLEFSS DWGQESGLSQ MWNPL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-40	6	160	12	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-40	6	160	12	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-40	6	160	12	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-40	6	160	12	165	NO APICAL MERISTEM PROTEIN
3swm_A	1e-40	6	160	15	168	NAC domain-containing protein 19
3swm_B	1e-40	6	160	15	168	NAC domain-containing protein 19
3swm_C	1e-40	6	160	15	168	NAC domain-containing protein 19
3swm_D	1e-40	6	160	15	168	NAC domain-containing protein 19
3swp_A	1e-40	6	160	15	168	NAC domain-containing protein 19
3swp_B	1e-40	6	160	15	168	NAC domain-containing protein 19
3swp_C	1e-40	6	160	15	168	NAC domain-containing protein 19
3swp_D	1e-40	6	160	15	168	NAC domain-containing protein 19
3ulx_A	1e-40	8	163	12	171	Stress-induced transcription factor NAC1
4dul_A	1e-40	6	160	12	165	NAC domain-containing protein 19
4dul_B	1e-40	6	160	12	165	NAC domain-containing protein 19
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	35	43	GGRGGGGGG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269\|PubMed:11114891}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR08G05360.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by auxin.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK120197	0.0	AK120197.1 Oryza sativa Japonica Group cDNA clone:J013036M14, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015648319.1	1e-161	NAC domain-containing protein 21/22 isoform X2
Swissprot	Q84TE6	1e-74	NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBL	A0A0D9X5A4	0.0	A0A0D9X5A4_9ORYZ; Uncharacterized protein
STRING	LPERR08G05360.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1012	37	138

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12977.1	1e-65	NAC family protein

Publications ? help Back to Top
Le Hénanff G, et al. Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance. J. Exp. Bot., 2013. 64(16): p. 4877-93 [PMID:24043850] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xiao D, et al. SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1275-91 [PMID:26304848] Huo X,Wang C,Teng Y,Liu X Identification of miRNAs associated with dark-induced senescence in Arabidopsis. BMC Plant Biol., 2015. 15: p. 266 [PMID:26530097] Chen X, et al. Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis. Plant Physiol., 2016. 170(4): p. 2136-45 [PMID:26850273] Liu C,Wang B,Li Z,Peng Z,Zhang J TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth. Plant Physiol., 2018. 176(1): p. 742-756 [PMID:29122985]