PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G04500.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bZIP
Protein Properties Length: 424aa    MW: 46047.9 Da    PI: 6.8534
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G04500.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.12.9e-11113144334
                      XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeek 34 
                      ++k +rr+++NReAAr+sR+RKka+i++Le+ 
  LPERR08G04500.1 113 RDKIQRRLAQNREAARKSRLRKKAYIQNLETS 144
                      7899*************************974 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.1E-4111171IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.508113148IPR004827Basic-leucine zipper domain
PfamPF001702.9E-8113148IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.6E-7115154No hitNo description
Gene3DG3DSA:1.20.5.1701.2E-8116160No hitNo description
PROSITE patternPS000360118133IPR004827Basic-leucine zipper domain
PfamPF141443.1E-26200274IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MTSAPAAQFA AAPAPAAMGI YERRHPPLAA GVWGDPFLLR QHDAGTSNGA MAMQAAAASL  60
PAAAPPPATL AEPKFESQVV ALPLQPVDKD DALLQEGQRL SPDSFEHEPS RPRDKIQRRL  120
AQNREAARKS RLRKKAYIQN LETSRMKLAH LEHEITRARQ QGVYINSSSK HSSLPSPIDS  180
GVAAFELEYA HWVDEQKKQT EDLRAAIHSG ASDTHLQILV ESGLDHYDKL FKSKSAAAKR  240
DVFFVMSGVW RTPAERFFLW ISGFRPSDVL AVVAPCLQED AAAVDERQAA EVEGLRQKAR  300
HLEDALSQGM EKLKQTLADS ILADAVLASG DGDGDESPPD SFSGGGGGGG DGGYMARMGS  360
AVGRLNTLVD FIDHADHLRL ETLQNMYRIL GPRQAARGLL ALGDYCQRLR ALSSLWAARP  420
REPA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G04500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0977399e-41FP097739.1 Phyllostachys edulis cDNA clone: bphyem210f19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006659885.21e-178PREDICTED: transcription factor TGA6-like
SwissprotQ6ZBS81e-140TGL10_ORYSJ; Transcription factor TGAL10
TrEMBLA0A0D9X4Y50.0A0A0D9X4Y5_9ORYZ; Uncharacterized protein
STRINGLPERR08G04500.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35713877
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10030.21e-109TGACG motif-binding factor 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]