PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G04150.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family AP2
Protein Properties Length: 286aa    MW: 30912.2 Da    PI: 5.299
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G04150.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.64.7e-1187143155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++ k++g+++A+++d  s+  g krk  + g++ t+e Aa+a++ a++k++g
  LPERR08G04150.1  87 SRYHGVTRLKWSGKFEAHLWDnTSQvEGrKRKGKH-GSYVTEENAARAHDLAALKYWG 143
                      79*******************55558777778888.999999**************98 PP
2AP249.21.3e-15188241155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpse.ngkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV+++k +grW A+I    e +    k ++lg+f t+ eAa+a++ a+ +l+g
  LPERR08G04150.1 188 SSYRGVTRRK-DGRWQARIGRIGEsR--DtKDIYLGTFETEIEAAEAYDLAAIELRG 241
                      67*****999.9******99953323..36**********99*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.86E-1287155No hitNo description
SuperFamilySSF541712.09E-1187154IPR016177DNA-binding domain
PfamPF008473.7E-887143IPR001471AP2/ERF domain
PROSITE profilePS5103215.92388153IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-1088153IPR001471AP2/ERF domain
SMARTSM003801.3E-1388159IPR001471AP2/ERF domain
CDDcd000182.22E-20188251No hitNo description
SuperFamilySSF541713.79E-17188251IPR016177DNA-binding domain
PfamPF008472.5E-11188241IPR001471AP2/ERF domain
PROSITE profilePS5103218.505189249IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-18189249IPR001471AP2/ERF domain
SMARTSM003801.6E-25189255IPR001471AP2/ERF domain
PRINTSPR003679.1E-8190201IPR001471AP2/ERF domain
PRINTSPR003679.1E-8231251IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MATVLPPPSS TEGEGEPQQQ QQLGDPPGEA GAGEEIAAID KQLAVADGGG GGGDEGKAAP  60
ADAAAGGGGG GKLVAEAMRK YAAPRSSRYH GVTRLKWSGK FEAHLWDNTS QVEGRKRKGK  120
HGSYVTEENA ARAHDLAALK YWGAGPTAKL NFNISDYEKE IEIMKTMSQD EFVVYIRRQS  180
SCFSRGTSSY RGVTRRKDGR WQARIGRIGE SRDTKDIYLG TFETEIEAAE AYDLAAIELR  240
GVHAVTNFDI SNYCEDGLRK LEGSSDVPRL EGSSESCSLF LQLKEE
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G04150.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6851180.0AY685118.1 Oryza sativa (japonica cultivar-group) transcription factor AP2D9 (AP2D9) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006659172.11e-148PREDICTED: AP2-like ethylene-responsive transcription factor PLT2
SwissprotQ84Z023e-64CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A0D9X4U50.0A0A0D9X4U5_9ORYZ; Uncharacterized protein
STRINGLPERR08G04150.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78643548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.16e-66AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]