PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G03610.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family G2-like
Protein Properties Length: 348aa    MW: 36486.1 Da    PI: 7.153
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G03610.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.62.4e-32157210255
          G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      pr+rWt++LH+rFv+ave LGG+++AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  LPERR08G03610.1 157 PRMRWTSTLHARFVHAVELLGGHDRATPKSVLELMDVKDLTLAHVKSHLQMYRT 210
                      9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.91E-16154211IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-29155211IPR009057Homeodomain-like
TIGRFAMsTIGR015575.3E-24157210IPR006447Myb domain, plants
PfamPF002495.7E-7158209IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MELFPSQPDL SLQIGLPTVA AATSATPRFF AAGGGGNNPA MAAPPSQLQL PIPMPLPMSA  60
GAGAGGGLQF YHHPDAAAMM RPIRGVPLYQ HQQQFVAAAP AQMVPHHASS GGGAAAACYC  120
EPCHVAGAAW RRAGCGGVAV AAARGVYPPA KRAPRAPRMR WTSTLHARFV HAVELLGGHD  180
RATPKSVLEL MDVKDLTLAH VKSHLQMYRT VKNTERPAAS SDQADGFENG SAGEICDENS  240
LDLHGGCRPE AMSVAVAVVA ARHGRLAACN DDGSNNGAQG ALWNSSSRED WSGFPSESNT  300
GSMQTLKDMQ SKSLEILSDM NSCVSETTSS TSELNLEFTL GRPQNRPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-16158212357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-16158212357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-16158212357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-16158212357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G03610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9570083e-99EU957008.1 Zea mays clone 1580405 KANADI-like transcription factor FEATHERED mRNA, complete cds.
GenBankFP0956893e-99FP095689.1 Phyllostachys edulis cDNA clone: bphylf026d19, full insert sequence.
GenBankKJ7268193e-99KJ726819.1 Zea mays clone pUT3358 G2-like transcription factor (GLK55) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648943.11e-158probable transcription factor RL9 isoform X1
TrEMBLA0A0D9X4N30.0A0A0D9X4N3_9ORYZ; Uncharacterized protein
STRINGLPERR08G03610.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47213665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.19e-37G2-like family protein