PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G03560.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family LSD
Protein Properties Length: 122aa    MW: 12891.1 Da    PI: 7.816
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G03560.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD144.52.5e-142751125
          zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                     C+gCr+lL+YP+GA+sV+Ca+C tV
  LPERR08G03560.1 27 CSGCRNLLMYPAGATSVCCAVCSTV 51
                     ***********************99 PP

2zf-LSD147.23.6e-156690125
          zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                     CggC+tlL+Y rGA+sV+C++C+tV
  LPERR08G03560.1 66 CGGCHTLLMYIRGATSVQCSCCHTV 90
                     ************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010537.6E-142454IPR005735Zinc finger, LSD1-type
PfamPF069431.4E-112751IPR005735Zinc finger, LSD1-type
SuperFamilySSF486953.91E-527107IPR011031Multihaem cytochrome
TIGRFAMsTIGR010536.5E-156392IPR005735Zinc finger, LSD1-type
PfamPF069431.0E-126690IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010534.8E-5101118IPR005735Zinc finger, LSD1-type
PfamPF069434.0E-5104118IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MPVPLAPYPT PPVPFTPPNG GQSQLVCSGC RNLLMYPAGA TSVCCAVCST VTAVPAPGTE  60
MAQLVCGGCH TLLMYIRGAT SVQCSCCHTV NLAMEANQVA HVNCGNCRML LMYQYGARLY  120
HH
Functional Description ? help Back to Top
Source Description
UniProtNegative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269|PubMed:15915636}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G03560.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. Down-regulated by dark. {ECO:0000269|PubMed:15915636}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5253681e-160AY525368.1 Oryza sativa (japonica cultivar-group) zinc finger protein LSD1 mRNA, complete cds.
GenBankCT8324711e-160CT832471.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA042K01, full insert sequence.
GenBankCT8324721e-160CT832472.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN027E05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010269986.11e-73PREDICTED: protein LSD1
RefseqXP_010269987.11e-73PREDICTED: protein LSD1
RefseqXP_010269988.11e-73PREDICTED: protein LSD1
SwissprotQ0J7V92e-69LSD1_ORYSJ; Protein LSD1
TrEMBLA0A0D9X4M66e-82A0A0D9X4M6_9ORYZ; Uncharacterized protein
STRINGOMERI08G03620.11e-79(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.37e-50lsd one like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]