PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G03540.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB_related
Protein Properties Length: 315aa    MW: 32934.9 Da    PI: 6.955
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G03540.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding231.9e-07253296243
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                      g+W++ +d  l++a k+++++   +W+++a+ ++ g+t   c  r
  LPERR08G03540.1 253 GSWSAGDDRALLNALKEFPKDtalRWEKVAAAVP-GKTKAACMKR 296
                      79********************************.*******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.23162215IPR001005SANT/Myb domain
SuperFamilySSF466898.22E-7164207IPR009057Homeodomain-like
PROSITE profilePS500905.831164205IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.0E-4164199IPR009057Homeodomain-like
CDDcd001671.70E-4165207No hitNo description
SMARTSM007174.6E-8251303IPR001005SANT/Myb domain
SuperFamilySSF466891.12E-9252301IPR009057Homeodomain-like
PfamPF002491.1E-6253296IPR001005SANT/Myb domain
PROSITE profilePS500906.841253301IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.608.4E-6253300IPR009057Homeodomain-like
CDDcd001675.18E-7254301No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005783Cellular Componentendoplasmic reticulum
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MEFIDDDWDS QPRARVIHSR SNATTTTASP TNPSRSLPHA AACAAAAVAL LAAAYYLLPS  60
YQILASLAVW TAASLLLAPF APSSATGGDI SVGIGEPLPE PEPIEDPIPD PAPASRRGRR  120
QNPAPAPNPP PSKPSDPIAH PPPRAAAAAV TAVPDSGETV EDAGEWTDQE MDILRRQMVR  180
HPAGEPQRWE KIAAAFGGRR TPESVIRAAK SGGGAAAAGA SFDQFLRKRK PLDPRAEAAD  240
AGGNAGVGEN ADGSWSAGDD RALLNALKEF PKDTALRWEK VAAAVPGKTK AACMKRVTEL  300
KRDFRSSKAA SEAAP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1225230LRKRKP
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of root hair development, possibly through auxin signaling. Its endoplasmic reticulum membrane localization is not compatible with its transcription factor activity in the nucleus. May be cleaved to target the nucleus. {ECO:0000269|PubMed:21477080}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G03540.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21477080}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006659147.11e-143PREDICTED: dnaJ homolog subfamily C member 2
SwissprotQ9ASQ22e-59MAMYB_ARATH; Transcription factor MAMYB
TrEMBLA0A0D9X4M30.0A0A0D9X4M3_9ORYZ; Uncharacterized protein
STRINGLPERR08G03540.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103112731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.19e-48MYB_related family protein