PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR08G03510.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | NAC | ||||||||
Protein Properties | Length: 699aa MW: 77626.1 Da PI: 4.4777 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166.2 | 1.2e-51 | 9 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lp GfrFhPtdeelv +yLk k++g+ ++evi+e+d++k+ePwdLp k +++++ ew+fF+++d+ky++g+r+nrat++gyWkatgkd+ + LPERR08G03510.1 9 LPLGFRFHPTDEELVRHYLKGKITGQIRGETEVIPEIDVCKCEPWDLPdKsLIRSDDPEWFFFAPKDRKYPNGSRSNRATEAGYWKATGKDRII 102 699************************99999***************96446677888************************************ PP NAM 93 lsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 +sk k++ +g+kktLvf++grapkge+t W+mheyr LPERR08G03510.1 103 KSKgdkkKQHMIGMKKTLVFHRGRAPKGERTGWIMHEYRT 142 **977655666***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.98E-57 | 3 | 172 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.164 | 9 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-27 | 10 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0071470 | Biological Process | cellular response to osmotic stress | ||||
GO:1900426 | Biological Process | positive regulation of defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005789 | Cellular Component | endoplasmic reticulum membrane | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 699 aa Download sequence Send to blast |
MTVMELKKLP LGFRFHPTDE ELVRHYLKGK ITGQIRGETE VIPEIDVCKC EPWDLPDKSL 60 IRSDDPEWFF FAPKDRKYPN GSRSNRATEA GYWKATGKDR IIKSKGDKKK QHMIGMKKTL 120 VFHRGRAPKG ERTGWIMHEY RTTEPQFESG EQVYDLSRSL VGGYVLYRLF RKQEEKIERP 180 SLDEMDRSGY SPTPSRSTPD NMEPNEDGNT PLNKESPESA LHESPIDLPA LTEAPAAPIT 240 RWLADTADNV TTNEANISHM PFHGLDGGAK ASPSVGASTQ LIHSRKNIYD NDELATVSAP 300 MLPLQDFGEF PLGAIGNFDG NMKPRDPVEE FLNQTIADPD EHSSTTSKAQ YDSDTGIVLT 360 EFENPGMMQG GFMDDPSGLE NLSFWPDDTN PQLSALYENA TLLPYDISAD QDVLSMDSGA 420 ESLQDLFNSL EDSSTKINTW NNEPVFQGTG IEIYEQLQSN DIFVNQGTAR RRLRLQQSES 480 LSPDFEDEES GIVVTSKYVN EVAEESTAEK DMPSDGDDAE STGITILRRR QAPTASSDDE 540 EAESTGITIL RRRHAPTASS GSFTQQGAAV RRVRLQCDLN AAPCSSGDGS SSCIIDESES 600 ECTMEKAEIE EHTRTTLAEG VDLSGPEHDA SAVVADDKSV LRQRKTAEGS DKENKQDYCV 660 LDSHVRAPVK KRGFPAYIIW LVLSLALVLL IFVGIYGWV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-45 | 9 | 173 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-45 | 9 | 173 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-45 | 9 | 173 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-45 | 9 | 173 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-45 | 9 | 173 | 20 | 169 | NAC domain-containing protein 19 |
3swm_B | 6e-45 | 9 | 173 | 20 | 169 | NAC domain-containing protein 19 |
3swm_C | 6e-45 | 9 | 173 | 20 | 169 | NAC domain-containing protein 19 |
3swm_D | 6e-45 | 9 | 173 | 20 | 169 | NAC domain-containing protein 19 |
3swp_A | 6e-45 | 9 | 173 | 20 | 169 | NAC domain-containing protein 19 |
3swp_B | 6e-45 | 9 | 173 | 20 | 169 | NAC domain-containing protein 19 |
3swp_C | 6e-45 | 9 | 173 | 20 | 169 | NAC domain-containing protein 19 |
3swp_D | 6e-45 | 9 | 173 | 20 | 169 | NAC domain-containing protein 19 |
4dul_A | 5e-45 | 9 | 173 | 17 | 166 | NAC domain-containing protein 19 |
4dul_B | 5e-45 | 9 | 173 | 17 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00108 | PBM | Transfer from AT4G35580 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR08G03510.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU846994 | 0.0 | EU846994.1 Oryza sativa Japonica Group clone KCS281G09 NAC2 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015650289.1 | 0.0 | NAC domain-containing protein 14 isoform X2 | ||||
TrEMBL | A0A0D9X4L9 | 0.0 | A0A0D9X4L9_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR08G03510.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5172 | 38 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35580.3 | 4e-69 | NAC transcription factor-like 9 |